| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.009G151200.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 52149.5 Isoelectric Point: 8.1279 |
| Chromosome | Chromosome/Scaffold: 09 Start: 21974275 End: 21978063 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 102 | 446 | 0 |
| QNRGGGQLNIPAGTWLTGSFNLTSNFTLFLQHGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNR TLEHTRGHLLELMNSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGITVAHPCT NIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYVANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPIFKDILV SNVVSINSTKAPVLEGVEGSSFEGLCFKNITLHGVALSTRWRCEY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MESHKTTFPA LLLATCKRPS FALIFLLFTL LTFLSLHLPV RPVWLLAAPH PPPHPTTCAA 60 FFRHGPPRKV VRSIQDFGGV GDGTTSNTES FRRAILYMQR FQNRGGGQLN IPAGTWLTGS 120 FNLTSNFTLF LQHGAVILAS QDPKEWPIIE ALPSYGRGRE RLGGRHISLI HGNGISNVVI 180 TGQNGTVDGQ GKMWWELWWN RTLEHTRGHL LELMNSDNVL ISNLTFRNSP FWTIHPVYCR 240 NVVIKGMTIL APLNAPNTDG IDPDSSSNVC IEDNYIESGD DLVAIKSGWD QYGITVAHPC 300 TNIIVRRISG TTPTCSGVGI GSEMSGGISN ITIENLHVWD SAAGVRIKSD KGRGGYVANV 360 SISDIRMERV KIPIRFSRGS NDHPDDGWDP KAVPIFKDIL VSNVVSINST KAPVLEGVEG 420 SSFEGLCFKN ITLHGVALST RWRCEYISGF ATEVFPVPCL ELRNNSYSSW CSPS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-22 | 73 | 374 | 321 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-25 | 73 | 435 | 384 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-28 | 74 | 469 | 420 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-34 | 170 | 447 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-57 | 63 | 414 | 376 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 57 | 466 | 51 | 460 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 57 | 471 | 62 | 476 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274138.1 | 0 | 57 | 471 | 62 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 56 | 474 | 19 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526639.1 | 0 | 57 | 474 | 60 | 480 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99965e-42 | 66 | 440 | 24 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99965e-42 | 66 | 440 | 24 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99965e-42 | 66 | 440 | 24 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99965e-42 | 66 | 440 | 24 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-21 | 106 | 433 | 39 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
