y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G170500.1 |
Family | PL1 |
Protein Properties | Length: 411 Molecular Weight: 44905.4 Isoelectric Point: 6.7478 |
Chromosome | Chromosome/Scaffold: 09 Start: 24925196 End: 24927951 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 123 | 327 | 0 |
QDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGIHLHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDH CSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQG NRFVA |
Full Sequence |
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Protein Sequence Length: 411 Download |
MTTTPVPLLF FLFSLLTPTL IFSSPLHNAE EVVQEVNRKI NASMARHRRN LGYLSCGSGN 60 PIDDCWRCDP NWEQNRQRLA DCAIGFGKNA IGGRDGKIYV VDDAGDDDPV NPKPGTLRHA 120 VIQDEPLWII FARDMVIQLK EELLMNSFKT IDGRGASVHI AGGPCITVQY VTNVIIHGIH 180 LHDCKQGGNA MVRSSPRHYG WRTVSDGDGV SIFGGSHVWV DHCSLSNCND GLIDAIHGST 240 AITISNNYMT HHDKVMLLGH SDSYTQDKDM QVTIAFNHFG EGLVQRMPRC RLGYFHVVNN 300 DYTHWEMYAI GGSANPTINS QGNRFVAPDD RFSKEVTKRE EAAESEWQGW NWRSEGDLLV 360 NGAFFTASGA GASSSYARAS SLSARPSSLV ASITTGAGAL SCKKASPCSS * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-27 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-73 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-81 | 134 | 329 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32549.1 | 0 | 17 | 408 | 23 | 413 | pectase lyase [Prunus persica] |
GenBank | ACU21247.1 | 0 | 1 | 408 | 1 | 406 | unknown [Glycine max] |
GenBank | ADB90476.1 | 0 | 27 | 408 | 34 | 411 | pectate lyase [Gossypium raimondii] |
DDBJ | BAE48664.1 | 0 | 17 | 408 | 23 | 413 | Pectate lyase [Prunus mume] |
RefSeq | XP_002322215.1 | 0 | 17 | 408 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 401 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 401 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 79 | 327 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 8e-16 | 150 | 382 | 151 | 396 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1pe9_B | 0.000000000000002 | 150 | 399 | 90 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |