Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G225400.1 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 53968 Isoelectric Point: 9.5272 |
Chromosome | Chromosome/Scaffold: 09 Start: 33406805 End: 33410940 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 100 | 448 | 0 |
KGGGQLSVPPGRWLTAPFNLTSHMTLFLARDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLL NHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSRN IVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENVLVWESRRAMRIKTAPGRGGYVRQITYRNLVFKNVRVGIVIKTDYNEHPGGGYDPKALPILRDISFI NIRGQGVRVPVRIQGSEQIPIRNVTFEDMKVGITYKKKHIFQCAFVQGQ |
Full Sequence |
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Protein Sequence Length: 487 Download |
MVENSGVLGW FLLNPKTPPF ASHKTLFAFL WLAALTSLFV WQRNTISGFL VLGGVPVQPP 60 PKLRPVVFCL TEFGGVGDGV TLNTEAFERG VRAISKLGNK GGGQLSVPPG RWLTAPFNLT 120 SHMTLFLARD AVILAIQDEK YWPLMPALPS YGYGREHPGP RYTSLIHGQN LRDVVITGHN 180 GTINGQGQTW WTKYRQKLLN HTRGPLVQIL WSSNIVISNI TLRDSPFWTL HPYDCKNVTV 240 KNVTILAPVY HAPNTDGIDP DSCEDMLIED CYISVGDDAI AIKSGWDQYG ITYGRPSRNI 300 VIRNLVVRSN VSAGISIGSE MSGGVSNVLV ENVLVWESRR AMRIKTAPGR GGYVRQITYR 360 NLVFKNVRVG IVIKTDYNEH PGGGYDPKAL PILRDISFIN IRGQGVRVPV RIQGSEQIPI 420 RNVTFEDMKV GITYKKKHIF QCAFVQGQVI GTISPAPCDN FDRYNEQGQL VKHAASQNVT 480 DIDYEI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-23 | 72 | 448 | 386 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-28 | 67 | 458 | 409 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-30 | 70 | 430 | 381 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-40 | 166 | 437 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-66 | 67 | 388 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 486 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 486 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 20 | 486 | 28 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 20 | 486 | 28 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 20 | 486 | 26 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 70 | 427 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 70 | 427 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 70 | 427 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 70 | 427 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-21 | 112 | 430 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 423 | 20 | 442 | 0 |
FE707848 | 300 | 70 | 369 | 0 |
FN769574 | 315 | 142 | 456 | 0 |
CX102356 | 332 | 123 | 454 | 0 |
EX656855 | 270 | 78 | 347 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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