Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G251500.1 |
Family | GH28 |
Protein Properties | Length: 422 Molecular Weight: 46042 Isoelectric Point: 8.4212 |
Chromosome | Chromosome/Scaffold: 09 Start: 36433858 End: 36439103 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 408 | 0 |
RETCHSKGNARVLVPEGRFVVSTMFFAGPCTTPDPVTIQVVGTVVATTDISEYVNGEWLMFESIDGIRLIGGGTFDGVGKESWKTSANCKVDPSDTCVRN PSSLYFRKVRNGIIQNIKSIDPKGFHVFVTNCVNIRLRLLKLVAPSESPNTDGIHISQSVNVKVSKNNIETGDDCISMIQGANDVHINKMNCGPGHGISI GSLGKYPDELEVKNISVTNISMVGTTNGVRIKTWPNKHPGSASFITFTDINMQNVQNPIIIDQEYECSKNCQNQPSLVQLKDISFSNIRGTTPTPIAVDL RCSMKFPCEKVKLENINLSLGPKPTGSRCQNIK |
Full Sequence |
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Protein Sequence Length: 422 Download |
MSITKRVGVL VMYFALVYHV DAKKKVMPVA GVDIYKDKNV AADKLSPGEK INNVLSFGAK 60 GDGEYDCTQA FMDAWRETCH SKGNARVLVP EGRFVVSTMF FAGPCTTPDP VTIQVVGTVV 120 ATTDISEYVN GEWLMFESID GIRLIGGGTF DGVGKESWKT SANCKVDPSD TCVRNPSSLY 180 FRKVRNGIIQ NIKSIDPKGF HVFVTNCVNI RLRLLKLVAP SESPNTDGIH ISQSVNVKVS 240 KNNIETGDDC ISMIQGANDV HINKMNCGPG HGISIGSLGK YPDELEVKNI SVTNISMVGT 300 TNGVRIKTWP NKHPGSASFI TFTDINMQNV QNPIIIDQEY ECSKNCQNQP SLVQLKDISF 360 SNIRGTTPTP IAVDLRCSMK FPCEKVKLEN INLSLGPKPT GSRCQNIKPI YMGLQKPPTC 420 P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-83 | 43 | 420 | 382 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 79 | 408 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-89 | 53 | 396 | 348 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-97 | 49 | 420 | 378 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-119 | 53 | 421 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 47 | 413 | 51 | 419 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 51 | 394 | 489 | 834 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 47 | 420 | 51 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002334010.1 | 0 | 42 | 420 | 37 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 44 | 420 | 44 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-20 | 144 | 394 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 5e-17 | 225 | 407 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-17 | 225 | 407 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-17 | 225 | 407 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-17 | 225 | 407 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |