Basic Information | |
---|---|
Species | Phaseolus vulgaris |
Cazyme ID | Phvul.009G252200.1 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 48659.9 Isoelectric Point: 5.5827 |
Chromosome | Chromosome/Scaffold: 09 Start: 36532500 End: 36535554 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 68 | 414 | 0 |
DKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPTHWDVIEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSSHS LNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSEYVCIEDCIVGMGFDAISLKSGWDEYGIAYGRPTEN VHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHLLKSNSGIEFRTTRGRGGYMKDIVISDIQMENVHTAIAATGNCGSHPDDKFDPNALPLLDHITLR DVTGKNITIAGNFAGIEESPFTNICLSNITLSTNSVSPITWECSNVS |
Full Sequence |
---|
Protein Sequence Length: 453 Download |
MFVALLLLVA LSNAVRVSGD GGQCGSNPTL NPRPHSVSIL EFGAVGDGRT LNTIAFQNAI 60 FYLKSFADKG GAQLYVPPGK WLTGSFNLTS HLTLFLEKGA VIIGSQDPTH WDVIEPLPSY 120 GRGLEVPGGR YQSLINGYML HDVVVTGNNG TIDGMGMVWW EWYSSHSLNH SRPHLVEIVA 180 SDYVVVSNLT FLNAPAYSIH PVYCSHVHIQ NVSISTPPES PYTVGIVPDS SEYVCIEDCI 240 VGMGFDAISL KSGWDEYGIA YGRPTENVHI RRVHLHAFSG SALAFGSDMS GGISNVLVEH 300 AHLLKSNSGI EFRTTRGRGG YMKDIVISDI QMENVHTAIA ATGNCGSHPD DKFDPNALPL 360 LDHITLRDVT GKNITIAGNF AGIEESPFTN ICLSNITLST NSVSPITWEC SNVSGFADSV 420 LPEPCPELGT PSYDSSSSCF YLHSISGKIA VQ* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-17 | 33 | 425 | 414 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-20 | 142 | 413 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 9.0e-23 | 35 | 452 | 431 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-25 | 34 | 339 | 322 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 2.0e-47 | 37 | 406 | 407 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 12 | 426 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 12 | 426 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 14 | 430 | 14 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 14 | 448 | 16 | 446 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 12 | 442 | 12 | 442 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5e-33 | 35 | 404 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5e-33 | 35 | 404 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5e-33 | 35 | 404 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5e-33 | 35 | 404 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000001 | 81 | 414 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |