Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G036600.1 |
Family | GH28 |
Protein Properties | Length: 298 Molecular Weight: 32145.2 Isoelectric Point: 6.9347 |
Chromosome | Chromosome/Scaffold: 10 Start: 5390515 End: 5393522 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 4 | 283 | 0 |
KIVAPAKNKWVSYYFTWILMSNVNGLIVDGREGLLDGLGFTWWPCKACQRPSVISFNACNDLRVSYLRIVNSPRSHINVNDCVNAIFSAITIHSPANSPN TDGFNVYASKNIWIRDSTIASGDDCIGISGNSSYINVTEIACGPGHGISIGSLGRGNDNTAEQIYVRNCSFTNTTNGARIKTFPNGSGYAREITFEEIKL IKAGNPIIIDQFYNDYSPKDEGVEVSGITFRGFDGTCVRDKAITLNCGPQGCFNITLDEIKIVSHEEGKQVYCSGKNAHG |
Full Sequence |
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Protein Sequence Length: 298 Download |
IGGKIVAPAK NKWVSYYFTW ILMSNVNGLI VDGREGLLDG LGFTWWPCKA CQRPSVISFN 60 ACNDLRVSYL RIVNSPRSHI NVNDCVNAIF SAITIHSPAN SPNTDGFNVY ASKNIWIRDS 120 TIASGDDCIG ISGNSSYINV TEIACGPGHG ISIGSLGRGN DNTAEQIYVR NCSFTNTTNG 180 ARIKTFPNGS GYAREITFEE IKLIKAGNPI IIDQFYNDYS PKDEGVEVSG ITFRGFDGTC 240 VRDKAITLNC GPQGCFNITL DEIKIVSHEE GKQVYCSGKN AHGTVTATTP NCSCLSP* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-53 | 20 | 293 | 290 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-61 | 20 | 267 | 259 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-62 | 1 | 268 | 286 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-65 | 3 | 272 | 278 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-74 | 3 | 296 | 304 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 296 | 94 | 397 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 295 | 87 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABD28723.1 | 0 | 1 | 295 | 80 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_197222.1 | 0 | 1 | 292 | 102 | 418 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 296 | 93 | 395 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 6e-24 | 37 | 265 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-24 | 37 | 265 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-24 | 37 | 265 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-24 | 37 | 265 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 6e-24 | 37 | 265 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO025017 | 203 | 95 | 295 | 0 |
CV536748 | 256 | 3 | 250 | 0 |
CX192293 | 219 | 1 | 218 | 0 |
EY474520 | 247 | 52 | 296 | 0 |
GT141262 | 229 | 70 | 296 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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