| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.010G037100.1 |
| Family | GH28 |
| Protein Properties | Length: 361 Molecular Weight: 38793.6 Isoelectric Point: 4.8808 |
| Chromosome | Chromosome/Scaffold: 10 Start: 5442461 End: 5444869 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 352 | 0 |
| WKEACGTEGTSTLVIPQNRVFMVKNINLSGPCKATSIHMQLEGKIVAPQKNEWTNYLKVDDESSLISISDVNGLRIDGNGEINGFGSAWWKCPSCQRPKV ISFQNCNDLRVSYLSIIDSPRAHVAIDGCSNAVFSNINIHAPANSPNTDGFDICASKYITIQDSIIGTGDDCIAINGGSSFINATGIACGPGHGISVGSL GKNGVHDTVEQVYVRNCSFTNTQNGARIKTWQGGSGYARKITFEKITLTKAFNPIIIDQNYGYDDFESDAVEVSEVTFRGFEGTSGDEKAIDLSCHSPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 361 Download |
| MQIVITCFFI LGCFAPCMFG RSMVGIQSTS YNVVNYGAHG NGESDDSQAI LSAWKEACGT 60 EGTSTLVIPQ NRVFMVKNIN LSGPCKATSI HMQLEGKIVA PQKNEWTNYL KVDDESSLIS 120 ISDVNGLRID GNGEINGFGS AWWKCPSCQR PKVISFQNCN DLRVSYLSII DSPRAHVAID 180 GCSNAVFSNI NIHAPANSPN TDGFDICASK YITIQDSIIG TGDDCIAING GSSFINATGI 240 ACGPGHGISV GSLGKNGVHD TVEQVYVRNC SFTNTQNGAR IKTWQGGSGY ARKITFEKIT 300 LTKAFNPIII DQNYGYDDFE SDAVEVSEVT FRGFEGTSGD EKAIDLSCHS PVFINVILEL 360 * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-76 | 58 | 352 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-78 | 29 | 348 | 334 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-85 | 33 | 348 | 329 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-104 | 31 | 348 | 324 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 6.0e-106 | 28 | 352 | 331 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 352 | 1 | 355 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 31 | 359 | 23 | 361 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 28 | 352 | 20 | 341 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 28 | 352 | 21 | 345 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 1 | 359 | 1 | 360 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 2e-20 | 118 | 315 | 66 | 271 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 1ib4_A | 2e-20 | 118 | 315 | 66 | 271 | A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. |
| PDB | 1ia5_A | 2e-20 | 118 | 315 | 66 | 271 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 8e-19 | 135 | 341 | 80 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-19 | 135 | 341 | 80 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
