Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G037200.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 41118.8 Isoelectric Point: 7.9769 |
Chromosome | Chromosome/Scaffold: 10 Start: 5457216 End: 5463011 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 378 | 0 |
AWQKTCSAKGASTLVIPSKVVFLLKKKIIFKGPCQATNINIQLQGNITVATQSAWLGDKSTIISITNVNGLTIDGSGGSIDGSGSSWWSCKTCPRPSVLS FNACNNLSVANLTIRNSPQAHITINGCVGATFSRITIVSPGDSPNTDGIDISSSKNILIKESNIATGDDCIAIIGDSSFINVTRISCGPGHGISIGSLGR DQVHDMVEQVYVHNCSFTKTTNGARIKTFQGGQGSARNITYEGITLTQVFNPIIINQNYMELMSEGGGVQVSGVTFRGFKGTSADDKAITLACGSQGCFN IVLDQVSITSSLPGKPTSCSCMNAHGT |
Full Sequence |
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Protein Sequence Length: 392 Download |
MQRLITWILI LCFVSPLCFC ESLMRSTNTN SVIDNGATGD GKTDDSQAFL SAWQKTCSAK 60 GASTLVIPSK VVFLLKKKII FKGPCQATNI NIQLQGNITV ATQSAWLGDK STIISITNVN 120 GLTIDGSGGS IDGSGSSWWS CKTCPRPSVL SFNACNNLSV ANLTIRNSPQ AHITINGCVG 180 ATFSRITIVS PGDSPNTDGI DISSSKNILI KESNIATGDD CIAIIGDSSF INVTRISCGP 240 GHGISIGSLG RDQVHDMVEQ VYVHNCSFTK TTNGARIKTF QGGQGSARNI TYEGITLTQV 300 FNPIIINQNY MELMSEGGGV QVSGVTFRGF KGTSADDKAI TLACGSQGCF NIVLDQVSIT 360 SSLPGKPTSC SCMNAHGTAT STVPNCASLL K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-68 | 57 | 381 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-72 | 25 | 388 | 380 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-79 | 19 | 386 | 382 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-85 | 19 | 389 | 380 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 6.0e-87 | 20 | 382 | 371 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 389 | 1 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 389 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266797.1 | 0 | 22 | 391 | 10 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 384 | 1 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 385 | 1 | 388 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-25 | 123 | 361 | 118 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 5e-25 | 92 | 371 | 45 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-25 | 92 | 371 | 45 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-25 | 92 | 371 | 45 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-25 | 92 | 371 | 45 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |