Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G037300.1 |
Family | GH28 |
Protein Properties | Length: 384 Molecular Weight: 40889.6 Isoelectric Point: 6.5715 |
Chromosome | Chromosome/Scaffold: 10 Start: 5466888 End: 5471446 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 371 | 0 |
RSTCGAEGTPTLLIPQNYVFLLSALLLKGPCNATTILIKLEGKIVAPAKDAWVGHTNSLISIVKVERLTVDGSGGLIDGFGSSWWPCKYCPRPATLIFDA CNYLTVHDLSITNSPKSHIHVHGCKDATFSHINITAPADSPNTDGIDVTSSKNIVIQNSTIQSGDDCVAVSGGSVAVNVTGIACGPGHGISIGSLGKRND TVEEVYVRNCSFTKTRYGARIKTFPIGFGCARKITFEEITLVETRYPILIDQNYGTYYLTNGGGVEISGVRFRGFQGTSFDGRAITLDCGQLGCHDIELD QIDISSSPAKPAYCFCNNAHGTV |
Full Sequence |
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Protein Sequence Length: 384 Download |
MQSIITLALI LALISPCFGS NYTFYNVMDF GAVGDAKTDD SQAFLKAWRS TCGAEGTPTL 60 LIPQNYVFLL SALLLKGPCN ATTILIKLEG KIVAPAKDAW VGHTNSLISI VKVERLTVDG 120 SGGLIDGFGS SWWPCKYCPR PATLIFDACN YLTVHDLSIT NSPKSHIHVH GCKDATFSHI 180 NITAPADSPN TDGIDVTSSK NIVIQNSTIQ SGDDCVAVSG GSVAVNVTGI ACGPGHGISI 240 GSLGKRNDTV EEVYVRNCSF TKTRYGARIK TFPIGFGCAR KITFEEITLV ETRYPILIDQ 300 NYGTYYLTNG GGVEISGVRF RGFQGTSFDG RAITLDCGQL GCHDIELDQI DISSSPAKPA 360 YCFCNNAHGT VTSTVPNCSC LLP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-64 | 52 | 368 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-67 | 23 | 379 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-71 | 27 | 381 | 373 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-86 | 22 | 381 | 374 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-94 | 17 | 374 | 368 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 381 | 1 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 381 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36307.1 | 0 | 1 | 381 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 381 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 9 | 381 | 4 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-24 | 122 | 353 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-24 | 122 | 353 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-24 | 122 | 353 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-24 | 122 | 353 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-24 | 122 | 353 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |