Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G037400.1 |
Family | GH28 |
Protein Properties | Length: 345 Molecular Weight: 36457.4 Isoelectric Point: 8.536 |
Chromosome | Chromosome/Scaffold: 10 Start: 5478771 End: 5482726 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 6 | 332 | 0 |
WQSTCGAQGMATLVIPANYEFLLSPLMLKGPCHASNIQIQLRGKIVAATKSAWPSYKYTWILITNVNGLTVDGTGGSLDGFGSSWWPCRTCPRPSVITFN ACTGLSVSHLNIINSLKSHININGCVRATFSGISILSPADSHNTDGITVYGSKNVWIRDSTIACGDDCIAISGGSSYVNVTGIACGPGHGISIGSLGNGN SNTVEQVHVRNCNFTKTQNGARIKTFEGRTGYARGITFEEITLIQTRNPIIINQFYTNRKPSLQNGGVEVSGITFRGFHGTSMTNEAITLNCGPQGCYNI VLDQNNIASSNPGKPASCSCKNAHGTV |
Full Sequence |
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Protein Sequence Length: 345 Download |
AFLKAWQSTC GAQGMATLVI PANYEFLLSP LMLKGPCHAS NIQIQLRGKI VAATKSAWPS 60 YKYTWILITN VNGLTVDGTG GSLDGFGSSW WPCRTCPRPS VITFNACTGL SVSHLNIINS 120 LKSHININGC VRATFSGISI LSPADSHNTD GITVYGSKNV WIRDSTIACG DDCIAISGGS 180 SYVNVTGIAC GPGHGISIGS LGNGNSNTVE QVHVRNCNFT KTQNGARIKT FEGRTGYARG 240 ITFEEITLIQ TRNPIIINQF YTNRKPSLQN GGVEVSGITF RGFHGTSMTN EAITLNCGPQ 300 GCYNIVLDQN NIASSNPGKP ASCSCKNAHG TVSSTLPTCP CLLP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-58 | 1 | 339 | 357 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-64 | 10 | 334 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-66 | 1 | 342 | 358 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-79 | 1 | 342 | 350 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 9.0e-81 | 1 | 335 | 342 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28723.1 | 0 | 1 | 343 | 34 | 391 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_197222.1 | 0 | 1 | 339 | 57 | 418 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_566524.1 | 0 | 1 | 342 | 42 | 389 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 342 | 45 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 342 | 46 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-23 | 18 | 304 | 26 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-23 | 18 | 304 | 26 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-23 | 18 | 304 | 26 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-23 | 18 | 304 | 26 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-23 | 18 | 304 | 26 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV540496 | 106 | 240 | 345 | 0 |
CX192293 | 262 | 14 | 273 | 0 |
GO025017 | 206 | 140 | 343 | 0 |
CA908616 | 160 | 1 | 160 | 0 |
GO013888 | 204 | 140 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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