Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G037700.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 43976.8 Isoelectric Point: 6.4852 |
Chromosome | Chromosome/Scaffold: 10 Start: 5499042 End: 5502715 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 396 | 0 |
KDICGSQDTPTLVIPPNGVFLIKSITLSGPCIATSINIQLQGSIVAPVKNEWLKVLGMLDPIQDPEQDLTDQRFNLIVISNVSRLSLDGTGGSIDGFGSS WWDCRNCERPTILRFRFCNDLTVSNLNISNSPKAHIRMNSCENATFSNISIHSPGDSPNTDGIDILASKNILIQDSTMHCGDDCIAISGGSSHINATGIA CGPGHGISIGSLGRNKAYDTVEEVYVKNCTFTNTENGARIKTVPGGSGYARNIIFENITVIQAQNPIIIDQYYESRIPMSGALNVSDVIFRGFSGTSAKK NAINLNCSSSGCFDIVLDHIHIVSSLPGKPASCSCNNAHGT |
Full Sequence |
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Protein Sequence Length: 409 Download |
MQTLITFLLI LGFVSPCLCV RWNNARTQNK TYNVKDYGAY GDGKYDDSGA FLRAWKDICG 60 SQDTPTLVIP PNGVFLIKSI TLSGPCIATS INIQLQGSIV APVKNEWLKV LGMLDPIQDP 120 EQDLTDQRFN LIVISNVSRL SLDGTGGSID GFGSSWWDCR NCERPTILRF RFCNDLTVSN 180 LNISNSPKAH IRMNSCENAT FSNISIHSPG DSPNTDGIDI LASKNILIQD STMHCGDDCI 240 AISGGSSHIN ATGIACGPGH GISIGSLGRN KAYDTVEEVY VKNCTFTNTE NGARIKTVPG 300 GSGYARNIIF ENITVIQAQN PIIIDQYYES RIPMSGALNV SDVIFRGFSG TSAKKNAINL 360 NCSSSGCFDI VLDHIHIVSS LPGKPASCSC NNAHGTATDT VPKCYLLS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-71 | 51 | 404 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-78 | 51 | 405 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-79 | 61 | 397 | 347 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-85 | 51 | 408 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-90 | 30 | 400 | 378 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 408 | 1 | 397 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 407 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 36 | 408 | 2 | 369 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 1 | 408 | 1 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 408 | 1 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-25 | 146 | 392 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-25 | 146 | 392 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-25 | 146 | 392 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-25 | 146 | 392 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-25 | 146 | 392 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |