| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.010G037800.1 |
| Family | GH28 |
| Protein Properties | Length: 339 Molecular Weight: 35758 Isoelectric Point: 5.5642 |
| Chromosome | Chromosome/Scaffold: 10 Start: 5505184 End: 5512123 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 33 | 261 | 0 |
| WKDTCGTQGTPTLLIPQNGVFLLKGIALNGPCNATNVNIKLEGKIVAPSKDEWEKVMTSNLILFSNLNGLSIDGSGGSIEGNGSSWWECISCGRPTILRF KFCNDLTVSNLNITNSPKAHIRINNCENATFSNITIHSPGDSFNTDGIDIFTSKNILIQDSTIHCGDDCIAISGGSSHINATGIACGPGHGISIGSLGRD ESYETVEEVYVRNCSFTNTTNGARIKTAP | |||
| Full Sequence |
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| Protein Sequence Length: 339 Download |
| WSVRTQNKTY NVIDYGAHGD GKLNDSGAFV SAWKDTCGTQ GTPTLLIPQN GVFLLKGIAL 60 NGPCNATNVN IKLEGKIVAP SKDEWEKVMT SNLILFSNLN GLSIDGSGGS IEGNGSSWWE 120 CISCGRPTIL RFKFCNDLTV SNLNITNSPK AHIRINNCEN ATFSNITIHS PGDSFNTDGI 180 DIFTSKNILI QDSTIHCGDD CIAISGGSSH INATGIACGP GHGISIGSLG RDESYETVEE 240 VYVRNCSFTN TTNGARIKTA PTKALNVSDV TFRGFNGTSA TADAITLNCS VPGCFNIVLD 300 DIDIVSSQSG KPVSCSCNNA HGTVTSTNPN CMSLFLLP* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-52 | 9 | 321 | 361 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-52 | 37 | 321 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-56 | 8 | 333 | 379 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-63 | 5 | 338 | 379 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 1.0e-68 | 8 | 328 | 363 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 9 | 333 | 29 | 397 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 10 | 334 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABD28723.1 | 0 | 9 | 332 | 15 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_195292.2 | 0 | 8 | 332 | 22 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 7 | 334 | 24 | 396 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 1e-22 | 47 | 275 | 21 | 250 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-22 | 47 | 275 | 21 | 250 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-22 | 47 | 275 | 21 | 250 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-22 | 47 | 275 | 21 | 250 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 1e-22 | 47 | 275 | 21 | 250 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EL454770 | 265 | 9 | 261 | 0 |
| GO025017 | 210 | 168 | 338 | 0 |
| CV538127 | 226 | 39 | 259 | 0 |
| CA908616 | 180 | 10 | 189 | 0 |
| DY961682 | 261 | 10 | 259 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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