Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G037900.1 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42322.5 Isoelectric Point: 9.3839 |
Chromosome | Chromosome/Scaffold: 10 Start: 5527825 End: 5532170 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 379 | 0 |
WQGVCGEEGPASLLIPSRKIFLVKRLKLSGPCKTPNVGIKLKGKIVAPSMSKWVGDSFSWIQILYVNGLTIDGDGGSIDGHGSTWWEKCRKCRRPKSLRF HACNGLTVKSLSMRNSPGAHISVNGMDGALFSQININSPPDSPNTDGFDIAASKNVAIQDSTLATGDDCIAINGGCSNIKATRLVCQGGHGISIGSLGRN KSHETVEEVHVRNCTFIGTTNGARIKTWPGGSGYARKITYEGIILKDVKNSIIIDQYYGIKTPNEVPNKVEDAVKVSEVIYRGFKGTSASAKAINLNCSP SGCFNITLDQIYTVHSKSIKKAYAFCKNI |
Full Sequence |
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Protein Sequence Length: 395 Download |
MQRLITCILI LGFISATFSN AETQVKYFNV MDFGAHGDGT SDDSNAIAKA WQGVCGEEGP 60 ASLLIPSRKI FLVKRLKLSG PCKTPNVGIK LKGKIVAPSM SKWVGDSFSW IQILYVNGLT 120 IDGDGGSIDG HGSTWWEKCR KCRRPKSLRF HACNGLTVKS LSMRNSPGAH ISVNGMDGAL 180 FSQININSPP DSPNTDGFDI AASKNVAIQD STLATGDDCI AINGGCSNIK ATRLVCQGGH 240 GISIGSLGRN KSHETVEEVH VRNCTFIGTT NGARIKTWPG GSGYARKITY EGIILKDVKN 300 SIIIDQYYGI KTPNEVPNKV EDAVKVSEVI YRGFKGTSAS AKAINLNCSP SGCFNITLDQ 360 IYTVHSKSIK KAYAFCKNIV NGRIGYTVPK VSCA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-73 | 26 | 361 | 347 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-76 | 55 | 382 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-77 | 4 | 390 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-87 | 28 | 379 | 356 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-97 | 17 | 393 | 380 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 28 | 393 | 30 | 395 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 27 | 393 | 22 | 393 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_566524.1 | 0 | 14 | 393 | 10 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 393 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 393 | 1 | 391 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-27 | 124 | 382 | 76 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-27 | 124 | 382 | 76 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-27 | 124 | 382 | 76 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-27 | 124 | 382 | 76 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-27 | 124 | 382 | 76 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |