| Basic Information | |
|---|---|
| Species | Phaseolus vulgaris |
| Cazyme ID | Phvul.010G038000.1 |
| Family | GH28 |
| Protein Properties | Length: 174 Molecular Weight: 18834.1 Isoelectric Point: 4.4916 |
| Chromosome | Chromosome/Scaffold: 10 Start: 5562682 End: 5565487 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 35 | 164 | 0 |
| AHGDGTNSPNTDGFDIVGSKNVAIEDSTLATGDDCIAINGGCSYINATRLVCEGGHGISIGSLGRNQSHETVEEVHVWNCSFIDTTNGARIKTWPGGSGY ARKITYEEIILEDVQNSIIIDQFYGIKTPN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 174 Download |
| MQRLITCILI LGFISATFNN AETQVKYFNV MDFGAHGDGT NSPNTDGFDI VGSKNVAIED 60 STLATGDDCI AINGGCSYIN ATRLVCEGGH GISIGSLGRN QSHETVEEVH VWNCSFIDTT 120 NGARIKTWPG GSGYARKITY EEIILEDVQN SIIIDQFYGI KTPNEVPNKV VYF* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-36 | 41 | 158 | 120 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-37 | 42 | 158 | 117 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-40 | 41 | 158 | 118 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 3.0e-42 | 41 | 158 | 118 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-42 | 41 | 158 | 118 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 2e-40 | 42 | 158 | 202 | 318 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 4.00001e-40 | 41 | 163 | 189 | 311 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABO81149.1 | 6.00036e-42 | 42 | 158 | 167 | 283 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | XP_002324855.1 | 0 | 41 | 158 | 194 | 311 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530440.1 | 3.00004e-41 | 42 | 158 | 7 | 123 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 5e-20 | 20 | 167 | 129 | 275 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-20 | 20 | 167 | 129 | 275 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 5e-20 | 20 | 167 | 129 | 275 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 5e-20 | 20 | 167 | 129 | 275 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 5e-20 | 20 | 167 | 129 | 275 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
