| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G007400.1 |
| Family | PL1 |
| Protein Properties | Length: 355 Molecular Weight: 39172.6 Isoelectric Point: 9.5817 |
| Chromosome | Chromosome/Scaffold: 01 Start: 502299 End: 503839 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 72 | 271 | 0 |
| WITFEKNMDIKLEKPLLISSHTAIDGRGVDVSIEGIGCLVVYKATDVIIHGLKIHHCKAQGPSSVMGPDGKLMPLGQMDGDAIRLVTASKVWIDHNTLYS CQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGYLRDKNMKVTVAFNHFGPNCNQRMPRVRHGYAHVANNLYLGWEQYAIGGSMNPSIKSESNHFIA | |||
| Full Sequence |
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| Protein Sequence Length: 355 Download |
| MNVIDQCWRM NPNWQRSRQH LATCSVGFAG KMTNNVGKNV LWYKVTDPSD DPVNPKQGTL 60 RYGATMITGK VWITFEKNMD IKLEKPLLIS SHTAIDGRGV DVSIEGIGCL VVYKATDVII 120 HGLKIHHCKA QGPSSVMGPD GKLMPLGQMD GDAIRLVTAS KVWIDHNTLY SCQDGLLDVT 180 RGSTFVTVSN NWFRDQDKVM LLGHDDGYLR DKNMKVTVAF NHFGPNCNQR MPRVRHGYAH 240 VANNLYLGWE QYAIGGSMNP SIKSESNHFI APAQSGKKEV TWRNTEIGAK GKPWNFYSVG 300 DMFTNGASFV QTGRRGTAKP NYNKEQTFKV GSANSVQSMT SSAGALTCSR TLTC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-27 | 73 | 269 | 214 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-60 | 73 | 269 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-68 | 78 | 272 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 354 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 354 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 354 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 354 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 280 | 29 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 347 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 347 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 8e-18 | 87 | 269 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 2e-17 | 73 | 270 | 56 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 1e-16 | 69 | 269 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 227 | 123 | 349 | 0 |
| DR808308 | 256 | 2 | 250 | 0 |
| HO778688 | 355 | 2 | 355 | 0 |
| FD757999 | 230 | 85 | 314 | 0 |
| FG606120 | 352 | 2 | 352 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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