| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G012200.1 |
| Family | GT48 |
| Protein Properties | Length: 1964 Molecular Weight: 226047 Isoelectric Point: 9.4641 |
| Chromosome | Chromosome/Scaffold: 01 Start: 806337 End: 822072 |
| Description | glucan synthase-like 12 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT48 | 1064 | 1818 | 0 |
| VPSNLEARRRISFFSNSLFMDMPTAPKVRNMLSFSVLTPYYTEDVLFSLLDLEVPNEDGVSILFYLQKIFPDEWNNFLERVDCSSEEELKGRDNLDEELR LWASYRGQTLTRTVRGMMYYRHALELQAFLDMAGDEDLMEGYKAIELSTDDQSKGGRSLLAQCQAVADMKFTYVVSCQKYGIHKRSGDPRAQDILRLMTT YPSLRVAYIDEVEETNPDRSKVIQKVYYSSLVKAALPKSIDSSEPVQNLDQVIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDMNQDNYMEEALK MRNLLQEFLKKPDGVRNPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLANPLKVRFHYGHPDVFDRLFHLTRGGVSKASKVINLSEDIFAGFNS TLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTVGFYFSTLITVLTVYVFLYGRLYLVLSGLEEGLST QKAIRDNKPLQVALASQSFVQIGFLMALPMLMEIGLERGFRTALSEFILMQLQLAPVFFTFSLGTKTHYYGRTLLHGGAKYRPTGRGFVVFHAKFADNYR LYSRSHFVKGIEMMILLVVYQIFGQPYRSAVAYLLITISMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWISNRGGIGVPSEKSWESWWEEEQEHL RHSGKRGILAEILLSLRFFIYQYGLVYHLTITKKTKSFLVYGVSWLVIFLILFVM | |||
| Full Sequence |
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| Protein Sequence Length: 1964 Download |
| MSSTSRGGGM GMDQAAGGPL ATPPQTQRRL TRTQTAGNLG ESIFDSEVVP SSLVEIAPIL 60 RVANEVESSN PRVAYLCRFY AFEKAHRLDP TSSGRGVRQF KTALLQRLER ENDPTLMGRV 120 KKSDAREMQS FYQHYYKKYI QALHNAADKA DRAQLTKAYQ TANVLFEVLK AVNTTQSIEV 180 DREILEAQDK VAEKTQIYLP YNILPLDPDS ANQAIMRYPE IQAAVVALRN TRGLPWPKDY 240 KKKNDEDVLD WLQAMFGFQK DNVANQREHL ILLLANVHIR QFPKPDQQPK LDERALTEVM 300 KKLFKNYKKW CKYLDRKSSL WLPTIQQEVQ QRKLLYMGLY LLIWGEAANL RFMPECICYI 360 YHHMAFELYG MLAGNVSPMT GENVKPAYGG EEEAFLSKVV TPIYNMIAKE AERSKKGKSK 420 HSQWRNYDDL NEYFWSVDCF RLGWPMRADA DFFCLSDHHH FEKNGDNKPA YRDRWVGKVN 480 FVEIRSFLHV FRSFDRMWSF FILCLQAMIT VAWHGSGQPS VIFSGDVFKK VLSVFITAAI 540 LKLGQAILDV ILNWKARQIM SFHVKLRFIL KVVSAAAWVV VLPVTYAYTW DDKPPGFAQT 600 IKGWFGNGFS SPSLFILAVV IYLAPNMLAA VLFLFPFIRR FLERSNYRIV MLMMWWSQPR 660 LYVGRGMHES TISLFKYTMF WVLLIITKLT FSYYIEIRPL VVPTKAIMSV HITTFQWHEF 720 FPRAKNNIGV VIALWAPIIL VYFMDSQIWY AIFSTFFGGI YGAFRRLGEI RTLGMLRSRF 780 QSLPGAFNAC LIPGDKSEPK KKGFKATLSR KFAEIPSNKE KEAARFAQLW NKIISSFREE 840 DLISNKEMDL LLVPYWADRD LDLIQWPPFL LASKIPIALD MAKDSNGKDK ELKKRIEFDN 900 YMSCAVRECY ASFKNIILFL VQGKREKEVI DFIFSEVNIH IDGGDLISEY KMSALPFLYD 960 HFVKLIKYLL ANKPEDRDQV VILFQDMLEV VTRDIMMEDH ISNLVDSIHG GSGHEGMTLH 1020 ERQYQLFASS GAIKFPIEPV TEAWKEKIKR LFLLLTTKES AMDVPSNLEA RRRISFFSNS 1080 LFMDMPTAPK VRNMLSFSVL TPYYTEDVLF SLLDLEVPNE DGVSILFYLQ KIFPDEWNNF 1140 LERVDCSSEE ELKGRDNLDE ELRLWASYRG QTLTRTVRGM MYYRHALELQ AFLDMAGDED 1200 LMEGYKAIEL STDDQSKGGR SLLAQCQAVA DMKFTYVVSC QKYGIHKRSG DPRAQDILRL 1260 MTTYPSLRVA YIDEVEETNP DRSKVIQKVY YSSLVKAALP KSIDSSEPVQ NLDQVIYRIK 1320 LPGPAILGEG KPENQNHAII FTRGEGLQTI DMNQDNYMEE ALKMRNLLQE FLKKPDGVRN 1380 PSILGLREHI FTGSVSSLAW FMSNQETSFV TIGQRLLANP LKVRFHYGHP DVFDRLFHLT 1440 RGGVSKASKV INLSEDIFAG FNSTLREGNV THHEYIQVGK GRDVGLNQIS MFEAKIANGN 1500 GEQTLSRDIY RLGHRFDFFR MLSCYFTTVG FYFSTLITVL TVYVFLYGRL YLVLSGLEEG 1560 LSTQKAIRDN KPLQVALASQ SFVQIGFLMA LPMLMEIGLE RGFRTALSEF ILMQLQLAPV 1620 FFTFSLGTKT HYYGRTLLHG GAKYRPTGRG FVVFHAKFAD NYRLYSRSHF VKGIEMMILL 1680 VVYQIFGQPY RSAVAYLLIT ISMWFMVGTW LFAPFLFNPS GFEWQKIVDD WTDWNKWISN 1740 RGGIGVPSEK SWESWWEEEQ EHLRHSGKRG ILAEILLSLR FFIYQYGLVY HLTITKKTKS 1800 FLVYGVSWLV IFLILFVMKT VSVGRRKFSA NFQLAFRLIK GMIFLTFISI LVTLIALPHM 1860 TVQDIFVCIL AFMPTGWGML LIAQACKPIV QRAGFWGSVQ TLARGYEIVM GLLLFTPVAF 1920 LAWFPFVSEF QTRMLFNQAF SRGLQISRIL GGPRKDRSSR NKE* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04652 | DUF605 | 8.0e-11 | 56 | 170 | 124 | + Vta1 like. Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. | ||
| pfam14288 | FKS1_dom1 | 2.0e-57 | 331 | 447 | 118 | + 1,3-beta-glucan synthase subunit FKS1, domain-1. The FKS1_dom1 domain is likely to be the 'Class I' region just N-terminal to the first set of transmembrane helices that is involved in 1,3-beta-glucan synthesis itself. This family is found on proteins with family Glucan_synthase, pfam02364. | ||
| pfam02364 | Glucan_synthase | 0 | 1064 | 1815 | 821 | + 1,3-beta-glucan synthase component. This family consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase EC:2.4.1.34 also known as callose synthase catalyzes the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall. The reaction catalyzed is:- UDP-glucose + {(1,3)-beta-D-glucosyl}(N) <=> UDP + {(1,3)-beta-D-glucosyl}(N+1). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI16456.1 | 0 | 12 | 1963 | 1 | 1948 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002283298.1 | 0 | 12 | 1963 | 1 | 1947 | PREDICTED: similar to Callose synthase 3 [Vitis vinifera] |
| RefSeq | XP_002299147.1 | 0 | 10 | 1963 | 1 | 1940 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304888.1 | 0 | 10 | 1963 | 1 | 1961 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528124.1 | 0 | 1 | 1963 | 1 | 1955 | transferase, transferring glycosyl groups, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2lxm_A | 0.01 | 60 | 169 | 21 | 128 | B Chain B, Lip5-chmp5 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| callose biosynthesis | 13-BETA-GLUCAN-SYNTHASE-RXN | EC-2.4.1.34 | 1,3-β-glucan synthase |
