| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G027400.1 |
| Family | GH2 |
| Protein Properties | Length: 1111 Molecular Weight: 125076 Isoelectric Point: 5.5139 |
| Chromosome | Chromosome/Scaffold: 01 Start: 2040981 End: 2050196 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 86 | 976 | 0 |
| FVQSLSGLWKFFLAPDPTSVPNKFYGTAFEDSEWETLPVPSNWEMHGYDRPIYTNVIYPFPVDPPHVPDDNPTGCYRTYFDIPEEWQGRRILLHFEAVDS AFCAWINGVPVGYSQDSRLPAEFEITDYCHPCGSGKKNVLAVQVFRWSDGSYLEDQDHWWLSGVHRDVLLLSKPQVFIADYFFKSNLAENFTCADIQVEV KIESSLAIPKEKILANFTIEAALYDTGSWYDSEESANLLSSNVANLKLTHSPMGLLGFLGNVLEGKLEMPKLWSAEQPNLYILVLSLKDATGQVVDCESC LVGIRQVSKAPKQLLVNGHPVILRGVNRHEHHPRVGKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHHRWYELCDLFGMYMIDEANIETHGFYLCEHLKH PTQEQSWAAAMMDRVISMVERDKNHACIISWSLGNEASYGPNHSAAAGWIREKDTSRLVHYEGGGSRTTSTDIVCPMYMRVWDIVKIAKDPAESRPLILC EYSHAMGNSNGNIHEYWEAINSTFGLQGGFIWDWVDQGLLKDSGDGTKHWAYGGDFGDTPNDLNFCLNGLTWPDRTPHPALHEVKYVYQPIKVSLEESRI KITSTHFFQTTQGLEFSWATQGDGYEIGSGILSLPLIEPQSSYELEWESGPWYPLLASSFAEEIFLTITTTLLHSTRWVEAGHVVSSSQVQLPTTRKILP HVIKTTDAKVLIETLGDIVRVSLPSFWEITWNIQTGSVESWKVGGVPVMNKGIFPCFWRAPTDNDKGGEKKSYYSRWKEARIDSIVYHTKSCSVKSTAND IVKIEVVYVGAPSCEEGSSSHSNAVFTVNMIYTIYSSGDLIIECNVIPSSELPPLPRVGVELHLEKSVDQIKWYGRGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1111 Download |
| MTSLVAQVVS PVETGHKVWQ DQSFIKWRKR DPHVTLHFHE SVEGSLRYWY QRNKVDHLVS 60 NSAVWNDDAV QGALDCAAFW VKDLPFVQSL SGLWKFFLAP DPTSVPNKFY GTAFEDSEWE 120 TLPVPSNWEM HGYDRPIYTN VIYPFPVDPP HVPDDNPTGC YRTYFDIPEE WQGRRILLHF 180 EAVDSAFCAW INGVPVGYSQ DSRLPAEFEI TDYCHPCGSG KKNVLAVQVF RWSDGSYLED 240 QDHWWLSGVH RDVLLLSKPQ VFIADYFFKS NLAENFTCAD IQVEVKIESS LAIPKEKILA 300 NFTIEAALYD TGSWYDSEES ANLLSSNVAN LKLTHSPMGL LGFLGNVLEG KLEMPKLWSA 360 EQPNLYILVL SLKDATGQVV DCESCLVGIR QVSKAPKQLL VNGHPVILRG VNRHEHHPRV 420 GKTNIESCMI KDLVLMKQNN MNAVRNSHYP QHHRWYELCD LFGMYMIDEA NIETHGFYLC 480 EHLKHPTQEQ SWAAAMMDRV ISMVERDKNH ACIISWSLGN EASYGPNHSA AAGWIREKDT 540 SRLVHYEGGG SRTTSTDIVC PMYMRVWDIV KIAKDPAESR PLILCEYSHA MGNSNGNIHE 600 YWEAINSTFG LQGGFIWDWV DQGLLKDSGD GTKHWAYGGD FGDTPNDLNF CLNGLTWPDR 660 TPHPALHEVK YVYQPIKVSL EESRIKITST HFFQTTQGLE FSWATQGDGY EIGSGILSLP 720 LIEPQSSYEL EWESGPWYPL LASSFAEEIF LTITTTLLHS TRWVEAGHVV SSSQVQLPTT 780 RKILPHVIKT TDAKVLIETL GDIVRVSLPS FWEITWNIQT GSVESWKVGG VPVMNKGIFP 840 CFWRAPTDND KGGEKKSYYS RWKEARIDSI VYHTKSCSVK STANDIVKIE VVYVGAPSCE 900 EGSSSHSNAV FTVNMIYTIY SSGDLIIECN VIPSSELPPL PRVGVELHLE KSVDQIKWYG 960 RGPFECYPDR KAAAHVGVYE QNASDMHVPY IVPGECSGRA DVRWVTFQNK DGVGIFASTY 1020 GSSPPMQMSA SYYSTAELDR ATHNEELAQG NDIEVHLDHK HMGVGGDDSW SPCVHDNYLV 1080 PAVPYSYSIR LCPITAATSG LEIYKSQLPN * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 9.0e-96 | 812 | 1091 | 281 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 3.0e-105 | 396 | 677 | 292 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 4.0e-148 | 87 | 974 | 901 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 85 | 1093 | 1035 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 88 | 1097 | 1018 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002266400.1 | 0 | 1 | 1110 | 1 | 1114 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 1 | 1110 | 1 | 1115 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002299206.1 | 0 | 1 | 1110 | 1 | 1110 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303929.1 | 0 | 1 | 1110 | 1 | 1113 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513059.1 | 0 | 1 | 1110 | 1 | 1110 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3muy_4 | 0 | 87 | 1092 | 51 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_3 | 0 | 87 | 1092 | 51 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_2 | 0 | 87 | 1092 | 51 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 3muy_1 | 0 | 87 | 1092 | 51 | 1021 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| PDB | 1f4h_D | 0 | 87 | 1092 | 49 | 1019 | 1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO804274 | 385 | 129 | 510 | 0 |
| ES794486 | 300 | 451 | 750 | 0 |
| EL444301 | 297 | 438 | 734 | 0 |
| HO804274 | 50 | 501 | 549 | 0.0000006 |
| ES794486 | 44 | 759 | 802 | 0.004 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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