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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G068100.3 |
Family | GT47 |
Protein Properties | Length: 302 Molecular Weight: 34134.3 Isoelectric Point: 6.5074 |
Chromosome | Chromosome/Scaffold: 01 Start: 5428724 End: 5432679 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 8 | 229 | 0 |
KSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRSTLVQTFGQRNHVCLNEGSITIPPFAPPQKMQAHQIPPDIPR SIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPW EEIGVFVAEEDVPNLDTILTSI |
Full Sequence |
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Protein Sequence Length: 302 Download |
MGLPLPFKSP RMMRSAIQLI SSNWPYWNRT EGADHFFVVP HDFGACFHYQ EEKAIERGIL 60 PLLQRSTLVQ TFGQRNHVCL NEGSITIPPF APPQKMQAHQ IPPDIPRSIF VYFRGLFYDV 120 NNDPEGGYYA RGARAAVWEN FKNNPLFDIS TDHPTTYYED MQRAIFCLCP LGWAPWSPRL 180 VEAVVFGCIP VIIADDIVLP FADAIPWEEI GVFVAEEDVP NLDTILTSIP PEVILRKQRL 240 LANPSMKRAM LFPQPAQPGD AFHQILNGLA RKLPHDRSVY LKSGQNILNW TAGPVGDLKP 300 W* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-55 | 13 | 229 | 223 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33320.1 | 0 | 1 | 301 | 112 | 412 | secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] |
RefSeq | NP_174064.1 | 0 | 2 | 301 | 113 | 412 | GUT2; catalytic/ glucuronoxylan glucuronosyltransferase [Arabidopsis thaliana] |
RefSeq | XP_002297880.1 | 0 | 1 | 301 | 112 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304637.1 | 0 | 2 | 301 | 114 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511079.1 | 0 | 2 | 301 | 118 | 417 | catalytic, putative [Ricinus communis] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES900637 | 301 | 2 | 302 | 0 |
EX388619 | 291 | 4 | 294 | 0 |
GT033383 | 301 | 2 | 302 | 0 |
GO846508 | 301 | 2 | 302 | 0 |
ES295444 | 292 | 5 | 296 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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