| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G087600.1 |
| Family | GH14 |
| Protein Properties | Length: 556 Molecular Weight: 62702.7 Isoelectric Point: 8.8459 |
| Chromosome | Chromosome/Scaffold: 01 Start: 6932325 End: 6936763 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 93 | 514 | 0 |
| YVTLPAELVAEDGKVRRIKVLTASLRALVTAGVEGVVMEIWWGIVEREKPRVYNWGGYLDLVALARRCGLKVRAVLAFHQRGTGPGDPLWVSLPQWVLEE IDKDPDIAYTDRFGRRNMEYISLGCDMFPVLKGRSPLQAYSDFMMNFRDTFRSLLGVVITGVQVGMGPAGELRYPSCPSQKLAWAWHTRELGEFQCYDKY MIASLNACAHDAGMREWGYGGPIGSGNLMHGPENTEFFKSNGGSWNTPFGKFFLQWYSGMLLLHGERICREAKTIFQGTEIDTSAKVAGIHWHYGMQSHP SELTAGYYNTSRRDGYLPIARMLGRYGFGLCCSGFGMRDVEEKKTNPVSSPEGFLKQLLLAARVCHIPIEGENSTTFLEDESFEQVLKMSKFYTYGLESP TFSFNFMRMDRYLFEQHKWVRF | |||
| Full Sequence |
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| Protein Sequence Length: 556 Download |
| MAIASPSTPT FSASFCCKRT VSTHLIRFPS TLSPTRTRHL PPRRFAISSR LNSSKSCGSV 60 YPDNGGSEDF EHYELQHGFT GPVERRRRGS PVYVTLPAEL VAEDGKVRRI KVLTASLRAL 120 VTAGVEGVVM EIWWGIVERE KPRVYNWGGY LDLVALARRC GLKVRAVLAF HQRGTGPGDP 180 LWVSLPQWVL EEIDKDPDIA YTDRFGRRNM EYISLGCDMF PVLKGRSPLQ AYSDFMMNFR 240 DTFRSLLGVV ITGVQVGMGP AGELRYPSCP SQKLAWAWHT RELGEFQCYD KYMIASLNAC 300 AHDAGMREWG YGGPIGSGNL MHGPENTEFF KSNGGSWNTP FGKFFLQWYS GMLLLHGERI 360 CREAKTIFQG TEIDTSAKVA GIHWHYGMQS HPSELTAGYY NTSRRDGYLP IARMLGRYGF 420 GLCCSGFGMR DVEEKKTNPV SSPEGFLKQL LLAARVCHIP IEGENSTTFL EDESFEQVLK 480 MSKFYTYGLE SPTFSFNFMR MDRYLFEQHK WVRFTRFVKQ LSGANIFRAR LDFGGDVQPT 540 SMSDVVKVRA AYTYC* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 3.0e-102 | 83 | 522 | 451 | + beta-amylase | ||
| PLN02905 | PLN02905 | 2.0e-102 | 91 | 523 | 443 | + beta-amylase | ||
| PLN02801 | PLN02801 | 3.0e-120 | 91 | 521 | 437 | + beta-amylase | ||
| PLN02803 | PLN02803 | 1.0e-170 | 71 | 535 | 468 | + beta-amylase | ||
| PLN00197 | PLN00197 | 7.0e-178 | 8 | 530 | 537 | + beta-amylase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN65860.1 | 0 | 1 | 534 | 1 | 529 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002263816.1 | 0 | 25 | 534 | 115 | 618 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297961.1 | 0 | 1 | 555 | 1 | 555 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304568.1 | 0 | 86 | 522 | 1 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002454872.1 | 0 | 113 | 531 | 1 | 417 | hypothetical protein SORBIDRAFT_03g000480 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1fa2_A | 0 | 92 | 521 | 15 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
| PDB | 1b1y_A | 0 | 92 | 528 | 8 | 441 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xgi_A | 0 | 92 | 528 | 12 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xgb_A | 0 | 92 | 528 | 12 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xg9_A | 0 | 92 | 528 | 12 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV263162 | 229 | 328 | 556 | 0 |
| HO784754 | 294 | 43 | 332 | 0 |
| HO784754 | 99 | 329 | 427 | 0 |
| HO784754 | 66 | 427 | 490 | 0 |
| JK654693 | 255 | 161 | 415 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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