Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.001G100000.1 |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52585.5 Isoelectric Point: 4.9473 |
Chromosome | Chromosome/Scaffold: 01 Start: 7918552 End: 7922243 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 83 | 432 | 0 |
SSEGGSILYVPPGRWLTGSFNLTSYFTLYLDKDAVLLASQDESEYPLIEPLPSYGRGRDADGARYSSLIFGNNLTDVIITGANGTIDGQGELWWTKFRAG ELKYTRPYLIEIMFSTNIQISNLTLINSPSWNVHPVYCSNVVVQGLTILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGISFGMPTK QLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDITAIDSESGVRIKTAVGRGGYVKDIYVRGMTLKTMKWVFWMTGNYGSHPDNNYDPNAIPVIQNINY RDVVAENVTMAAKLEGIAGDPFTGICISNVTIGLAQNSKKLQWNCTDVAG |
Full Sequence |
---|
Protein Sequence Length: 482 Download |
MELWTSARRS KVIDVRGLLG VLVLFYTVGV ESRKSVKWDY FEYAALSCRA HSASVSDFGG 60 VGDGTTANTK AFQAAIDHLS QFSSEGGSIL YVPPGRWLTG SFNLTSYFTL YLDKDAVLLA 120 SQDESEYPLI EPLPSYGRGR DADGARYSSL IFGNNLTDVI ITGANGTIDG QGELWWTKFR 180 AGELKYTRPY LIEIMFSTNI QISNLTLINS PSWNVHPVYC SNVVVQGLTI LAPVRSPNTD 240 GINPDSCTNT RIEDCYIVSG DDCVAVKSGW DEYGISFGMP TKQLVIRRLT CISPTSAVIA 300 LGSEMSGGIE DVRAEDITAI DSESGVRIKT AVGRGGYVKD IYVRGMTLKT MKWVFWMTGN 360 YGSHPDNNYD PNAIPVIQNI NYRDVVAENV TMAAKLEGIA GDPFTGICIS NVTIGLAQNS 420 KKLQWNCTDV AGITSEVNPK PCALLPDQGP GKIGGCNFPE DSLPVENMEV QTCSFFRKHH 480 W* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-20 | 55 | 442 | 411 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-25 | 52 | 414 | 376 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 6.0e-26 | 50 | 352 | 314 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-31 | 115 | 442 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-61 | 53 | 349 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278930.1 | 0 | 1 | 479 | 1 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 1 | 481 | 1 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301370.1 | 0 | 29 | 475 | 19 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 1 | 474 | 1 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 1 | 479 | 1 | 479 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7.00649e-45 | 51 | 425 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7.00649e-45 | 51 | 425 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7.00649e-45 | 51 | 425 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7.00649e-45 | 51 | 425 | 26 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-16 | 62 | 388 | 20 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DY257045 | 327 | 96 | 422 | 0 |
ES810566 | 341 | 139 | 479 | 0 |
DT516553 | 264 | 219 | 482 | 0 |
EL471087 | 306 | 71 | 375 | 0 |
DT517370 | 252 | 231 | 482 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|