Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G105300.1 |
Family | GT47 |
Protein Properties | Length: 534 Molecular Weight: 61043.8 Isoelectric Point: 7.9362 |
Chromosome | Chromosome/Scaffold: 01 Start: 8390041 End: 8391877 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 146 | 471 | 0 |
SCDGRGVYVYDLPSKFNKDLIGQCGDMMPWTDFCKYFNNEALGEPIANLGKGWYHTHQYSLEPIFHSRILSHPCRVYNESEAKLFYVPYYGGLDILRWHF KNVSDDVKDALAMDLMKWLEHRRPWVQNSGTDHVFVLGKISWDFRRKNYTSWGTRFLELEQMQNPIKLLIERQPWEVNDIAIPHPTFFHPHSDDDIVAWQ QKIIETTRKNLVSFAGAARPDQPESIRSTLINQCTSTSSDKCQFLDCKSGGCNQPESVTKLFLESEFCLQPPGDSPTRKSVFDSLVSGCIPVLFDPFTAY YQYPWHLPEDHGKYSVFIDQEEVRQM |
Full Sequence |
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Protein Sequence Length: 534 Download |
MAVSINRRKS KPSKKAETNE HCSCGTFLFK ILSRTPLGIL LLILVYLWSS STTIISGKIV 60 HICVSSRKLS NLYCLSAGTQ PNFEIPVPLI NNSFTKVANV FTKDSIPAVI DGTDKNGNEE 120 IAIAKKAVKE QLQLHRSWMP NTNHASCDGR GVYVYDLPSK FNKDLIGQCG DMMPWTDFCK 180 YFNNEALGEP IANLGKGWYH THQYSLEPIF HSRILSHPCR VYNESEAKLF YVPYYGGLDI 240 LRWHFKNVSD DVKDALAMDL MKWLEHRRPW VQNSGTDHVF VLGKISWDFR RKNYTSWGTR 300 FLELEQMQNP IKLLIERQPW EVNDIAIPHP TFFHPHSDDD IVAWQQKIIE TTRKNLVSFA 360 GAARPDQPES IRSTLINQCT STSSDKCQFL DCKSGGCNQP ESVTKLFLES EFCLQPPGDS 420 PTRKSVFDSL VSGCIPVLFD PFTAYYQYPW HLPEDHGKYS VFIDQEEVRQ MKVNVVGRLS 480 SISARERDDM RRYIVYELLP GLVYGDSSCR FQKFQDAFSI TVNTLLERVS KMQ* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-68 | 146 | 482 | 352 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34680.1 | 0 | 1 | 532 | 456 | 992 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_176534.2 | 0 | 115 | 531 | 245 | 662 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_002269913.1 | 0 | 1 | 532 | 1 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299537.1 | 0 | 1 | 533 | 1 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509789.1 | 0 | 1 | 533 | 1 | 567 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |