| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G108000.1 |
| Family | GH28 |
| Protein Properties | Length: 156 Molecular Weight: 17428.7 Isoelectric Point: 8.9379 |
| Chromosome | Chromosome/Scaffold: 01 Start: 8576912 End: 8578677 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 16 | 154 | 4.8e-21 |
| TKQETIQNKGNTIDGSGSKWWQDHPFEDPIDNESQLIILLNNRIRRELSGKMPSIKPGCSKDSHKTIKISIAVLRFYGSFNATITGITIQNSPQCDLKFD NPVGVLAVRACSSSPEDSPNTDGIHLKNSKGVLIHSTDL | |||
| Full Sequence |
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| Protein Sequence Length: 156 Download |
| YDNREKEKIR TKKYITKQET IQNKGNTIDG SGSKWWQDHP FEDPIDNESQ LIILLNNRIR 60 RELSGKMPSI KPGCSKDSHK TIKISIAVLR FYGSFNATIT GITIQNSPQC DLKFDNPVGV 120 LAVRACSSSP EDSPNTDGIH LKNSKGVLIH STDLAC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 0.0007 | 89 | 152 | 64 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-5 | 89 | 155 | 67 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 6.0e-6 | 28 | 154 | 127 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-10 | 25 | 152 | 128 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 20 | 156 | 193 | 322 | unknown [Populus trichocarpa] |
| EMBL | CAN65317.1 | 4.00001e-41 | 15 | 156 | 58 | 194 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 20 | 156 | 194 | 323 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314612.1 | 0 | 20 | 156 | 59 | 188 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 2.94273e-44 | 17 | 156 | 193 | 325 | polygalacturonase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| ES831463 | 148 | 17 | 156 | 0 |
| DR010029 | 145 | 20 | 156 | 1.4013e-45 |
| EB124640 | 145 | 20 | 156 | 2.8026e-45 |
| DW491690 | 145 | 20 | 156 | 4.2039e-45 |
| ES800057 | 148 | 17 | 156 | 4.2039e-45 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra014620 | ||||
| Glycine max | Glyma16g22488.1 | Glyma09g26905.1 | |||
| Prunus persica | ppb019654m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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