y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G111500.5 |
Family | AA3 |
Protein Properties | Length: 412 Molecular Weight: 44874.4 Isoelectric Point: 8.1122 |
Chromosome | Chromosome/Scaffold: 01 Start: 8885602 End: 8890379 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 51 | 404 | 5.60519e-45 |
LEYANPGGLTVLLHATVYKILFATKARPKPVAHGVVYRDASGAKHRAYLKRGLKNEIIISSGALGSPQLLMLSGVGPAQQLRAHNITVVLDQPMVGQLMS DNPMNAIFVPSPLPVEVSLIQVVGITQFGSYIEAASGENFGGSPQRDYGMFSPKIGQLSTVPPKQRTPEALAKAIELMNNLDQQAFQGGFILEKIMGPIS TGHLELRTRHPEDNPSVTFNYFKEPQDLQRCVEGISTIEKVIDSRPFSKFRFDYLSVPQLLNMTASAPVNLLPRHYNSSQSLEDFCKDTVMTIWHYHGGC QAGSVVDHDYKVMGVDALRVIDGSTFNVSPGTNPQATVMMLGRYMGVNILKERL |
Full Sequence |
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Protein Sequence Length: 412 Download |
MGPWQSAVRD GLLEAGVLPN NGFTYDHIKG TKVGGTIFDR AGNRHTAADL LEYANPGGLT 60 VLLHATVYKI LFATKARPKP VAHGVVYRDA SGAKHRAYLK RGLKNEIIIS SGALGSPQLL 120 MLSGVGPAQQ LRAHNITVVL DQPMVGQLMS DNPMNAIFVP SPLPVEVSLI QVVGITQFGS 180 YIEAASGENF GGSPQRDYGM FSPKIGQLST VPPKQRTPEA LAKAIELMNN LDQQAFQGGF 240 ILEKIMGPIS TGHLELRTRH PEDNPSVTFN YFKEPQDLQR CVEGISTIEK VIDSRPFSKF 300 RFDYLSVPQL LNMTASAPVN LLPRHYNSSQ SLEDFCKDTV MTIWHYHGGC QAGSVVDHDY 360 KVMGVDALRV IDGSTFNVSP GTNPQATVMM LGRYMGVNIL KERLAKEDLA N* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 1.0e-17 | 59 | 151 | 93 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 5.0e-22 | 59 | 392 | 343 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
pfam05199 | GMC_oxred_C | 1.0e-26 | 248 | 392 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 2.0e-32 | 56 | 405 | 358 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 3 | 407 | 409 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34759.1 | 0 | 1 | 407 | 168 | 575 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001053612.1 | 0 | 1 | 409 | 170 | 586 | Os04g0573100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002282510.1 | 0 | 1 | 407 | 134 | 541 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298074.1 | 0 | 1 | 411 | 167 | 577 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509694.1 | 0 | 1 | 408 | 171 | 546 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 4 | 407 | 154 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 4 | 407 | 154 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 4 | 407 | 154 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 4 | 407 | 154 | 521 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 4 | 407 | 154 | 521 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO799688 | 294 | 111 | 404 | 0 |
CX672181 | 276 | 127 | 400 | 0 |
FQ439655 | 278 | 129 | 405 | 0 |
HO796743 | 407 | 4 | 406 | 0 |
EX529929 | 319 | 90 | 408 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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