| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G148900.2 |
| Family | GH14 |
| Protein Properties | Length: 548 Molecular Weight: 61093.1 Isoelectric Point: 7.3937 |
| Chromosome | Chromosome/Scaffold: 01 Start: 12278156 End: 12282118 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 88 | 502 | 0 |
| FVMLPLDTITIGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPLKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE MSKNPDLVYTDRSGRRNPEYISLGCDSLPILRGRTPIQVYSDYMRSFRERFKDYLGDVIMEIQVGMGPCGELRYPAYPETNGTWRFPGIGEFQCYDKYMR ASLEASAEALGKKDWGRGGPHDSGQYNHFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGEKILAAAEGIFQGTGAQLSGKVAGIHWHYRTRSHAAEL TAGYYNTRHHDGYLPIARMFSKHGVVFNFTCMEMRDGEQPEHANCSPQGLVRQVKMATRTAGTELAGENALERYDAGAYTQVLATSRSESGNGLTAFTYL RMNKKLFEGDNWRQL | |||
| Full Sequence |
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| Protein Sequence Length: 548 Download |
| MTSALQSSTS FISLKDTRSP KTPDDFSGTI CFAHIKPSCR LQAKNSMQEA QLSHDEILMT 60 EGRKSKKGGE LHAISGPRSS NDSKVPVFVM LPLDTITIGG NLNKPRAMNA SLMALRSAGV 120 EGVMVDAWWG LVEKDGPLKY NWEGYAELVQ MVQKHGLKLQ VVMSFHQCGG NVGDSCSIPL 180 PPWVLEEMSK NPDLVYTDRS GRRNPEYISL GCDSLPILRG RTPIQVYSDY MRSFRERFKD 240 YLGDVIMEIQ VGMGPCGELR YPAYPETNGT WRFPGIGEFQ CYDKYMRASL EASAEALGKK 300 DWGRGGPHDS GQYNHFPEET GFFRRDGTWN TEYGQFFLEW YSGKLLEHGE KILAAAEGIF 360 QGTGAQLSGK VAGIHWHYRT RSHAAELTAG YYNTRHHDGY LPIARMFSKH GVVFNFTCME 420 MRDGEQPEHA NCSPQGLVRQ VKMATRTAGT ELAGENALER YDAGAYTQVL ATSRSESGNG 480 LTAFTYLRMN KKLFEGDNWR QLVEFVKSMS EGGRNEKLSE CDSHGTNLYI GFIKDKSVQK 540 TKEAALA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 2.0e-150 | 2 | 509 | 539 | + beta-amylase | ||
| pfam01373 | Glyco_hydro_14 | 4.0e-178 | 88 | 505 | 431 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02803 | PLN02803 | 0 | 1 | 547 | 548 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 60 | 520 | 467 | + beta-amylase; Provisional | ||
| PLN02801 | PLN02801 | 0 | 85 | 509 | 433 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62440.1 | 0 | 1 | 547 | 1 | 543 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282871.1 | 0 | 1 | 547 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326690.1 | 0 | 1 | 547 | 1 | 547 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329547.1 | 0 | 1 | 547 | 1 | 548 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517513.1 | 0 | 1 | 546 | 1 | 546 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1q6c_A | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1uko_D | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 85 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794833 | 412 | 123 | 534 | 0 |
| BU103692 | 456 | 85 | 540 | 0 |
| HO781538 | 404 | 30 | 432 | 0 |
| HO825836 | 382 | 159 | 540 | 0 |
| CK293967 | 311 | 159 | 469 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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