Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G158000.1 |
Family | GT8 |
Protein Properties | Length: 485 Molecular Weight: 55608.5 Isoelectric Point: 8.6094 |
Chromosome | Chromosome/Scaffold: 01 Start: 13148612 End: 13152953 |
Description | Nucleotide-diphospho-sugar transferases superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 59 | 283 | 2.8e-28 |
GTPRDYDFYVAIRVMLRSLARLHVDADLVVIASHDVPLRWVHTMEQEDGARVMRVENVDNPYKNQPNFNRRFKLTLNKLYVWKLIEYERVVMLDADNLFL RRADELFQCGQFCAVFINPCIFHTGLFVLQPSMEVFKDMLHQLEIGKENPDGADQGFISGYFPDLLDMPMFHPPLNGTTVNGSYRLPLGYQMDATYYYLR LRWNVPCGPNSVITFPGASWLKPWY |
Full Sequence |
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Protein Sequence Length: 485 Download |
MASSREPWLM LRFLLVLVFA VYKTTAFGEV MRAPQIEQQQ QEGQRQRHKN AYATMMYMGT 60 PRDYDFYVAI RVMLRSLARL HVDADLVVIA SHDVPLRWVH TMEQEDGARV MRVENVDNPY 120 KNQPNFNRRF KLTLNKLYVW KLIEYERVVM LDADNLFLRR ADELFQCGQF CAVFINPCIF 180 HTGLFVLQPS MEVFKDMLHQ LEIGKENPDG ADQGFISGYF PDLLDMPMFH PPLNGTTVNG 240 SYRLPLGYQM DATYYYLRLR WNVPCGPNSV ITFPGASWLK PWYWWSWPVL PLGIQWHEQR 300 RQSLGYGTET PMALIQCIVY LGIIAVTRLA RPNISKICYR RTEKNISVIQ AGLKMLAIWS 360 ILAAYLLPCI IIPCTIHPLL GWGLYLLGSF ALCSMAINAF MLPMLPVLTP CLGIFGVLLV 420 MAFPLYPNGI IRCLSIFGYA FCAAPFLWVS LVKIMASLQA SLERENFFPR LGESSPPSGF 480 NKLY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00505 | Glyco_transf_8 | 6.0e-7 | 132 | 220 | 116 | + Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. | ||
COG5597 | COG5597 | 5.0e-7 | 60 | 222 | 179 | + Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | ||
PLN00176 | PLN00176 | 2.0e-7 | 86 | 222 | 175 | + galactinol synthase | ||
pfam01501 | Glyco_transf_8 | 1.0e-11 | 63 | 286 | 258 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 2.0e-64 | 50 | 303 | 264 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN77033.1 | 0 | 55 | 471 | 1 | 422 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_193393.4 | 0 | 16 | 484 | 13 | 494 | transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] |
RefSeq | NP_565817.2 | 0 | 15 | 484 | 12 | 497 | glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] |
RefSeq | XP_002269578.1 | 0 | 13 | 476 | 8 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002528922.1 | 0 | 8 | 484 | 8 | 483 | glucosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3v8z_A | 0.00000000001 | 109 | 284 | 77 | 242 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
PDB | 3v8y_A | 0.00000000001 | 109 | 284 | 77 | 242 | A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 |
PDB | 1zct_B | 0.00000000001 | 109 | 284 | 77 | 242 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
PDB | 1zct_A | 0.00000000001 | 109 | 284 | 77 | 242 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
PDB | 3u2x_B | 0.00000000002 | 132 | 220 | 83 | 172 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |