Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G162600.1 |
Family | CE8 |
Protein Properties | Length: 624 Molecular Weight: 68346.1 Isoelectric Point: 8.9539 |
Chromosome | Chromosome/Scaffold: 01 Start: 13596152 End: 13598490 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 312 | 607 | 0 |
DVVVAADGSGNYSTVSAAAAAAPTRSSKRYIIRIKAGVYRETVQVPINKTNLMFLGDGRRKTIITASRSVVDGITAFRSATVAVMGEGFLARDIAFQNTA GPSNRQAVALRVSSDRAAFYKCNVLGYQDTLHVHANRQFFINCLIAGTVDFIFGNSAAVFQDCDIHARRPNPGQTITITAQGRSDLNQNTGIVIQKSRIH ATSDLLPVRSNFSAYLGRPWKEYSRTVVMQSSISDVINPAGWLEWRGKYALNTLYYGEYNNSGAGAATSERVNWKGYKVITAATEAKSFTPRNFIA |
Full Sequence |
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Protein Sequence Length: 624 Download |
MVQFCVCSIK HTITASLQTL YPPFISFLFF LHSRIKMIQE DHGSLTEISD SGKHISFSQK 60 NKSLSLALFV SLLLVATIAA VVTPVNSQNS NKNDAAHSII KMSCSSTRYP ELCYSAIANG 120 PGAAASLAAI NDENDVLIES IRATQQAIDT NTAGIESYKT TNKMKLTNQQ NDALDTSTDN 180 NELSQSDLQN AINSLNYYTN EIPLSDQDTE PDINTPLSSC ITYQDTIMDG FSHTAADKQV 240 RKDISDGVDN VRKMCMNTLA MNMNMTATRI ANELKTTKRN LKEENSRNES GWPKWLSVAN 300 RRLLQSSSLT PDVVVAADGS GNYSTVSAAA AAAPTRSSKR YIIRIKAGVY RETVQVPINK 360 TNLMFLGDGR RKTIITASRS VVDGITAFRS ATVAVMGEGF LARDIAFQNT AGPSNRQAVA 420 LRVSSDRAAF YKCNVLGYQD TLHVHANRQF FINCLIAGTV DFIFGNSAAV FQDCDIHARR 480 PNPGQTITIT AQGRSDLNQN TGIVIQKSRI HATSDLLPVR SNFSAYLGRP WKEYSRTVVM 540 QSSISDVINP AGWLEWRGKY ALNTLYYGEY NNSGAGAATS ERVNWKGYKV ITAATEAKSF 600 TPRNFIAGST WLKSTTFPFS LDL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 2.0e-142 | 77 | 619 | 549 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 3.0e-144 | 138 | 623 | 490 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-150 | 182 | 620 | 441 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 312 | 609 | 298 | + Pectinesterase. | ||
PLN02313 | PLN02313 | 0 | 77 | 623 | 563 | + Pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAC18725.1 | 0 | 37 | 623 | 1 | 588 | putative pectin methylesterase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002304257.1 | 0 | 38 | 623 | 1 | 579 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326432.1 | 0 | 37 | 623 | 1 | 587 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326620.1 | 0 | 37 | 623 | 1 | 587 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331224.1 | 0 | 101 | 623 | 1 | 523 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 305 | 623 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 312 | 619 | 4 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 9e-28 | 323 | 581 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 9e-28 | 323 | 581 | 18 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-27 | 316 | 581 | 12 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |