Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G162700.1 |
Family | CE8 |
Protein Properties | Length: 557 Molecular Weight: 61324.9 Isoelectric Point: 7.9115 |
Chromosome | Chromosome/Scaffold: 01 Start: 13601229 End: 13603989 |
Description | pectin methylesterase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 273 | 556 | 0 |
DVTVAKDDSGDCTTLREAVGKIPKKSKSRFIIYVKEGEYLENVILDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTASFAVAGKSFFARDIKFINTA GAEKHQAVAFRSGSDMSVLFRCAFDGFQDTLYAHSNRQFYRDCDITGTIDLSMFGSLPQPRSQTCFMFGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKD PNQNTGISIQNCKFSASGNVTAPTYLGRPWKDYSTAVIMQSDIGPFLRPSGWMSWVSGVDPPATIFYAEYQNTGPGARVDGRVK |
Full Sequence |
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Protein Sequence Length: 557 Download |
MVKYVDEVEQ QAFRRKTRKR LIIVVVSSIV LLAVIIGAVI GVVLHNRNNN SSSNPVPPPE 60 LTPAASLKAV CSVTRYPTSC FSSISALETG NTTDPEELFK LSLHVAMNEL SKLKDYPDKL 120 IQSIDDATLQ DALKVCATVF DDAVDRLNDS ISSMAVGEGG KILSTAKMDD LKTWISTTIT 180 DQETCLDALQ ELNVTKHFNQ TLVDHVKAEM ENSTEFVSNS LAIVAKILGL LSDFNIPIHR 240 RLLGFERTHN SRFPHWVGLG DRRLLQMSTP KPDVTVAKDD SGDCTTLREA VGKIPKKSKS 300 RFIIYVKEGE YLENVILDKS KWNVMIYGDG KDKTIISGSL NFVDGTPTFS TASFAVAGKS 360 FFARDIKFIN TAGAEKHQAV AFRSGSDMSV LFRCAFDGFQ DTLYAHSNRQ FYRDCDITGT 420 IDLSMFGSLP QPRSQTCFMF GNAAVVFQNC NIQPRQPLPN QFNTITAQGK KDPNQNTGIS 480 IQNCKFSASG NVTAPTYLGR PWKDYSTAVI MQSDIGPFLR PSGWMSWVSG VDPPATIFYA 540 EYQNTGPGAR VDGRVK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02301 | PLN02301 | 4.0e-137 | 61 | 556 | 505 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 4.0e-140 | 63 | 556 | 506 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 2.0e-165 | 273 | 556 | 289 | + Pectinesterase. | ||
PLN02314 | PLN02314 | 0 | 5 | 556 | 552 | + pectinesterase | ||
PLN02468 | PLN02468 | 0 | 5 | 556 | 559 | + putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65650.1 | 0 | 5 | 556 | 13 | 548 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_175787.1 | 0 | 5 | 556 | 13 | 548 | ATPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002265217.1 | 0 | 5 | 556 | 13 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304256.1 | 0 | 5 | 556 | 13 | 549 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532945.1 | 0 | 5 | 556 | 13 | 550 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 266 | 555 | 1 | 279 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 273 | 556 | 4 | 276 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000005 | 256 | 507 | 14 | 274 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000005 | 274 | 502 | 8 | 245 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000005 | 274 | 502 | 8 | 245 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |