Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G171900.1 |
Family | GH28 |
Protein Properties | Length: 448 Molecular Weight: 48592.7 Isoelectric Point: 8.8687 |
Chromosome | Chromosome/Scaffold: 01 Start: 14567762 End: 14573157 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 82 | 414 | 0 |
EMACSFRGRTRIVIPAGYNFLVHPVDFGGPCKSKVTLDISGTIVAPEDPAAWKGLNHRKWLYFHGVKHLTVEGGGTVNGRGWLWWAQSCKINKTNPCRNA PTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFNLIVTSPAVSPNTDGIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIRNIACGPGHGISI GSLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVSNPIIIDQYYCDAHVPCANQTSAVKVENISFRRIKGTSATEEAIKF ACSDDLPCKGLYLEDVQLLSHTGGTTRSFCWQA |
Full Sequence |
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Protein Sequence Length: 448 Download |
MNNLRFGSCP KGTTTIRVLI CACFVCVQGF DSLLQLPQSA PARIRPSSKR VLVVGDFGAK 60 GDGLSNDTQA CHHYTAFKEA WEMACSFRGR TRIVIPAGYN FLVHPVDFGG PCKSKVTLDI 120 SGTIVAPEDP AAWKGLNHRK WLYFHGVKHL TVEGGGTVNG RGWLWWAQSC KINKTNPCRN 180 APTAITFHKC KDLKVENLKV VCGQKMHIAF TNCLRVMTFN LIVTSPAVSP NTDGIHISAS 240 HGVKIKDSVV RTGDDCISIV SNSSRIKIRN IACGPGHGIS IGSLGKSNSS SLVRDVMVDG 300 AFLSNTDNGV RIKTWQGGGG NATNITFQNI FMENVSNPII IDQYYCDAHV PCANQTSAVK 360 VENISFRRIK GTSATEEAIK FACSDDLPCK GLYLEDVQLL SHTGGTTRSF CWQAYGSSRG 420 LVHPSPCFSC SEGFIKEKVP SHLLQSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-84 | 17 | 427 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-84 | 47 | 429 | 384 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-94 | 85 | 411 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-116 | 31 | 424 | 396 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 447 | 448 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 28 | 439 | 33 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 16 | 447 | 17 | 445 | polygalacturonase [Citrus sinensis] |
RefSeq | XP_002281827.1 | 0 | 15 | 447 | 9 | 435 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 1 | 447 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 24 | 447 | 5 | 424 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-23 | 152 | 345 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-21 | 136 | 411 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 136 | 411 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 136 | 411 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 136 | 411 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV243754 | 197 | 252 | 448 | 0 |
EC954904 | 297 | 24 | 320 | 0 |
DV145178 | 246 | 18 | 261 | 0 |
EY660853 | 258 | 16 | 271 | 0 |
DV145325 | 249 | 198 | 446 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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