Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G171900.3 |
Family | GH28 |
Protein Properties | Length: 436 Molecular Weight: 47182.1 Isoelectric Point: 8.848 |
Chromosome | Chromosome/Scaffold: 01 Start: 14567762 End: 14573157 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 402 | 0 |
MACSFRGRTRIVIPAGYNFLVHPVDFGGPCKSKVTLDISGTIVAPEDPAAWKGLNHRKWLYFHGVKHLTVEGGGTVNGRGWLWWAQSCKINKTNPCRNAP TCKDLKVENLKVVCGQKMHIAFTNCLRVMTFNLIVTSPAVSPNTDGIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSN SSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVSNPIIIDQYYCDAHVPCANQTSAVKVENISFRRIKGTSATEEAIKFACSDDLP CKGLYLEDVQLLSHTGGTTRSFCWQA |
Full Sequence |
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Protein Sequence Length: 436 Download |
MNNLRFGSCP KGTTTIRVLI CACFVCVQGF DSLLQLPQSA PARIRPSSKR VLVVGDFGAK 60 GDGLSNDTQA FKEAWEMACS FRGRTRIVIP AGYNFLVHPV DFGGPCKSKV TLDISGTIVA 120 PEDPAAWKGL NHRKWLYFHG VKHLTVEGGG TVNGRGWLWW AQSCKINKTN PCRNAPTCKD 180 LKVENLKVVC GQKMHIAFTN CLRVMTFNLI VTSPAVSPNT DGIHISASHG VKIKDSVVRT 240 GDDCISIVSN SSRIKIRNIA CGPGHGISIG SLGKSNSSSL VRDVMVDGAF LSNTDNGVRI 300 KTWQGGGGNA TNITFQNIFM ENVSNPIIID QYYCDAHVPC ANQTSAVKVE NISFRRIKGT 360 SATEEAIKFA CSDDLPCKGL YLEDVQLLSH TGGTTRSFCW QAYGSSRGLV HPSPCFSCSE 420 GFIKEKVPSH LLQSF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 9.0e-83 | 47 | 417 | 377 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-83 | 17 | 415 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-88 | 79 | 399 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-113 | 31 | 412 | 390 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 435 | 442 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 28 | 427 | 33 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 16 | 435 | 17 | 445 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 15 | 435 | 15 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 1 | 435 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 24 | 435 | 5 | 424 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 146 | 333 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 2e-19 | 219 | 399 | 165 | 340 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 3e-19 | 130 | 399 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-19 | 130 | 399 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-19 | 130 | 399 | 53 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV243754 | 197 | 240 | 436 | 0 |
DV145325 | 249 | 186 | 434 | 0 |
EC954904 | 291 | 24 | 308 | 0 |
DV145178 | 240 | 18 | 249 | 0 |
EY660853 | 252 | 16 | 259 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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