Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G171900.4 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 43667.3 Isoelectric Point: 9.456 |
Chromosome | Chromosome/Scaffold: 01 Start: 14567762 End: 14573157 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 311 | 0 |
MACSFRGRTRIVIPAGYNFLVHPVDFGGPCKSKVTLDISGTIVAPEDPAAWKGLNHRKWLYFHGVKHLTVEGGGTVNGRGWLWWAQSCKINKTNPCRNAP TAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFNLIVTSPAVSPNTDGIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIRNIACGPGHGISIG SLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQT |
Full Sequence |
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Protein Sequence Length: 403 Download |
MNNLRFGSCP KGTTTIRVLI CACFVCVQGF DSLLQLPQSA PARIRPSSKR VLVVGDFGAK 60 GDGLSNDTQA FKEAWEMACS FRGRTRIVIP AGYNFLVHPV DFGGPCKSKV TLDISGTIVA 120 PEDPAAWKGL NHRKWLYFHG VKHLTVEGGG TVNGRGWLWW AQSCKINKTN PCRNAPTAIT 180 FHKCKDLKVE NLKVVCGQKM HIAFTNCLRV MTFNLIVTSP AVSPNTDGIH ISASHGVKIK 240 DSVVRTGDDC ISIVSNSSRI KIRNIACGPG HGISIGSLGK SNSSSLVRDV MVDGAFLSNT 300 DNGVRIKTWQ TSAVKVENIS FRRIKGTSAT EEAIKFACSD DLPCKGLYLE DVQLLSHTGG 360 TTRSFCWQAY GSSRGLVHPS PCFSCSEGFI KEKVPSHLLQ SF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-66 | 17 | 382 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 8.0e-67 | 47 | 384 | 378 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-69 | 79 | 366 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-93 | 31 | 379 | 389 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 402 | 442 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 28 | 394 | 33 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 16 | 402 | 17 | 445 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 15 | 402 | 15 | 441 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 1 | 402 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 24 | 402 | 5 | 424 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-17 | 130 | 370 | 53 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 130 | 370 | 53 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 130 | 370 | 53 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-17 | 130 | 370 | 53 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-17 | 130 | 370 | 53 | 300 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY660853 | 252 | 16 | 265 | 0 |
DV145178 | 240 | 18 | 255 | 0 |
EC954904 | 287 | 24 | 310 | 0 |
EY660204 | 243 | 16 | 256 | 0 |
EY661495 | 223 | 16 | 236 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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