Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G199300.1 |
Family | GH28 |
Protein Properties | Length: 295 Molecular Weight: 31933.6 Isoelectric Point: 6.7269 |
Chromosome | Chromosome/Scaffold: 01 Start: 19297367 End: 19299252 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 5 | 274 | 0 |
LSTWLRFKDIAWLTVSGSGLMDGRGKGWWDASCRYRHGKAVRFEGCEHLLVDHINIVNSPQIHITLLGSRNAELRFLDIQSPESSPNTDGIHISSSNDVT IHDSIIGSGDDCISIGDYTSNITILDVSCGPGHGISIGSFGGGGNEVEVEGIFVSRANFSGTTNGARIKTWQGARGNVRDVHFSDLIFTAVENPIIIDEH YGDPQEKNQTGVHISDVSYSRAQGTAKTAVAINFNCSSSVACTNITLDNIQLKSSIRGQQLSSFCNNAHG |
Full Sequence |
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Protein Sequence Length: 295 Download |
KERDLSTWLR FKDIAWLTVS GSGLMDGRGK GWWDASCRYR HGKAVRFEGC EHLLVDHINI 60 VNSPQIHITL LGSRNAELRF LDIQSPESSP NTDGIHISSS NDVTIHDSII GSGDDCISIG 120 DYTSNITILD VSCGPGHGIS IGSFGGGGNE VEVEGIFVSR ANFSGTTNGA RIKTWQGARG 180 NVRDVHFSDL IFTAVENPII IDEHYGDPQE KNQTGVHISD VSYSRAQGTA KTAVAINFNC 240 SSSVACTNIT LDNIQLKSSI RGQQLSSFCN NAHGITKGIV YPKSCLNYVK YQRA* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-41 | 8 | 285 | 290 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-43 | 4 | 286 | 290 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-44 | 3 | 283 | 292 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-51 | 8 | 273 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-56 | 8 | 288 | 291 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 2 | 286 | 79 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
RefSeq | NP_178131.1 | 0 | 2 | 286 | 49 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002329026.1 | 0 | 1 | 294 | 37 | 330 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002466241.1 | 0 | 2 | 289 | 138 | 435 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002529616.1 | 0 | 2 | 282 | 181 | 471 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 19 | 258 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-19 | 9 | 271 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-19 | 9 | 271 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-19 | 9 | 271 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-19 | 9 | 271 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT769246 | 265 | 36 | 286 | 1.96182e-44 |
DT746124 | 251 | 50 | 286 | 1.99965e-42 |
DT768232 | 243 | 58 | 286 | 8.00001e-42 |
ES829659 | 131 | 160 | 286 | 9e-38 |
JZ191937 | 289 | 8 | 286 | 1e-37 |
Sequence Alignments (This image is cropped. Click for full image.) |
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