| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G200400.5 |
| Family | GH35 |
| Protein Properties | Length: 724 Molecular Weight: 79829.7 Isoelectric Point: 7.9546 |
| Chromosome | Chromosome/Scaffold: 01 Start: 19554464 End: 19561616 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 10 | 220 | 0 |
| GFPVWLKYIPGINFRTDNGPFKAQMRKFTTKIVNMMKAERLFESQGGPIILSQIENEYGPMEYELGSPGQAYTKWAAQMAVGLRTGVPWVMCKQDDAPDP IINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTQFGGPVPHRPAEDMAFSVARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQ PKWGHLKDLHR | |||
| Full Sequence |
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| Protein Sequence Length: 724 Download |
| MFCFFFFSRG FPVWLKYIPG INFRTDNGPF KAQMRKFTTK IVNMMKAERL FESQGGPIIL 60 SQIENEYGPM EYELGSPGQA YTKWAAQMAV GLRTGVPWVM CKQDDAPDPI INTCNGFYCD 120 YFSPNKAYKP KMWTEAWTGW FTQFGGPVPH RPAEDMAFSV ARFIQKGGSF INYYMYHGGT 180 NFGRTAGGPF IATSYDYDAP LDEYGLLRQP KWGHLKDLHR AIKLCEPALV SGDATVIPLG 240 NYQEAHVFNY KAGGCAAFLA NYHQRSFAKV SFRNMHYNLP PWSISILPDC KNTVYNTARV 300 GAQSATIKMT PVPMHGGLSW QTYNEEPSSS GDNTFTMVGL LEQINTTRDV SDYLWYMTDV 360 HIDPSEGFLK SGKYPVLTVL SAGHALHVFI NGQLSGTAYG SLDFPKLTFS QGVSLRAGVN 420 KISLLSIAVG LPNVGPHFET WNAGILGPVT LNGLNEGRMD LSWQKWSYKI GLHGEALSLH 480 SISGSSSVEW AEGSLVAQKQ PLSWYKTTFN APAGNSPLAL DMGSMGKGQI WINGQHVGRH 540 WPAYKASGTC GECTYIGTYN ENKCSTNCGE ASQRWYHVPQ SWLKPTGNLL VVFEEWGGDP 600 NGVSLVRREV DSVCADIYEW QPTLMNYQMQ ASGKVNKPLR PKAHLSCGPG QKIRSIKFAS 660 FGTPEGVCGS YNQGSCHAFH SYDAFNNLCV GQNSCSVTVA PEMFGGDPCP SVMKKLAAEA 720 ICS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1874 | LacA | 0.002 | 35 | 212 | 228 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 8.0e-21 | 645 | 722 | 82 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 1.0e-94 | 10 | 222 | 228 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 10 | 723 | 715 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK96254.1 | 0 | 10 | 723 | 133 | 846 | unknown [Populus trichocarpa x Populus deltoides] |
| EMBL | CAC44500.1 | 0 | 10 | 723 | 130 | 843 | beta-galactosidase [Fragaria x ananassa] |
| RefSeq | XP_002327432.1 | 0 | 10 | 723 | 126 | 839 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329051.1 | 0 | 20 | 723 | 124 | 830 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527409.1 | 0 | 10 | 723 | 132 | 845 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-16 | 10 | 218 | 108 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.003 | 371 | 541 | 394 | 546 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 0.00000000001 | 10 | 209 | 111 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 0.00000000001 | 10 | 209 | 111 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO780602 | 608 | 10 | 608 | 0 |
| HO778160 | 605 | 10 | 612 | 0 |
| HO795552 | 516 | 10 | 524 | 0 |
| HO784793 | 321 | 46 | 366 | 0 |
| DY907427 | 312 | 83 | 394 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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