Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G200800.1 |
Family | AA3 |
Protein Properties | Length: 592 Molecular Weight: 65035.5 Isoelectric Point: 10.0374 |
Chromosome | Chromosome/Scaffold: 01 Start: 19634572 End: 19639222 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 58 | 581 | 0 |
HAYDYIVVGGGTAGCPLAATLSQRFSVLLLERGGVPFANANVSFSKNFHITLADTSSTSASQYFISTDGVLNARARVLGGGTCINAGFYTRASKRFIHKV GWDAKLVNKSYPWVEKQIVHRPKVAPWQVVVRDSLLDLGVAPFNGFTYDHIYGTKFGGTIFDQFGRRQTAAELLASADPRKLTVLVHATVQKVLFDISGK RPKAVGVLFKDENGNQHQAFLSNSQRSEIILSCGAIGTPQMLLLSGIGPKDELEEKKISVVLHNKFVGKGMADNPMNAIFVPFKRPVQQSLIQTVGITKM GVYIEASSGFGQSKDSIQCHHGIMSAEIGQLSTLPPKQRTPEAIQAYIKRKKDIPHEAFKGGFILEKIANPISTGQLRLISTNVEDNPSVTFNYFKHPRD LQRCVDGIRMATKMVQSEHFRNFTQCDKQTTDKILNMSVSANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVNSDYKVLGVNRLRIVDGSVF DESPGTNPQATVMMMGRYMGLKIL |
Full Sequence |
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Protein Sequence Length: 592 Download |
MASSVANQLF LFFFLWLYTL SSSQAGHHYS EFRYPFIRKA SSFPSSSSSF SSSGGGDHAY 60 DYIVVGGGTA GCPLAATLSQ RFSVLLLERG GVPFANANVS FSKNFHITLA DTSSTSASQY 120 FISTDGVLNA RARVLGGGTC INAGFYTRAS KRFIHKVGWD AKLVNKSYPW VEKQIVHRPK 180 VAPWQVVVRD SLLDLGVAPF NGFTYDHIYG TKFGGTIFDQ FGRRQTAAEL LASADPRKLT 240 VLVHATVQKV LFDISGKRPK AVGVLFKDEN GNQHQAFLSN SQRSEIILSC GAIGTPQMLL 300 LSGIGPKDEL EEKKISVVLH NKFVGKGMAD NPMNAIFVPF KRPVQQSLIQ TVGITKMGVY 360 IEASSGFGQS KDSIQCHHGI MSAEIGQLST LPPKQRTPEA IQAYIKRKKD IPHEAFKGGF 420 ILEKIANPIS TGQLRLISTN VEDNPSVTFN YFKHPRDLQR CVDGIRMATK MVQSEHFRNF 480 TQCDKQTTDK ILNMSVSANV NLVPKHTNDT KSLEQFCKDT VITIWHYHGG CHVGKVVNSD 540 YKVLGVNRLR IVDGSVFDES PGTNPQATVM MMGRYMGLKI LRDRLGKGAG V* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 7.0e-19 | 216 | 330 | 117 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 6.0e-26 | 428 | 573 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 1.0e-27 | 61 | 573 | 555 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 1.0e-47 | 60 | 584 | 575 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 19 | 591 | 573 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35951.1 | 0 | 30 | 591 | 33 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275841.1 | 0 | 12 | 591 | 6 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 57 | 591 | 14 | 547 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 1 | 591 | 1 | 591 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 22 | 590 | 28 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 59 | 584 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 59 | 584 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 59 | 584 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 59 | 584 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 59 | 584 | 26 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |