y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G206800.2 |
Family | GH3 |
Protein Properties | Length: 777 Molecular Weight: 83350.8 Isoelectric Point: 6.5011 |
Chromosome | Chromosome/Scaffold: 01 Start: 20699464 End: 20704399 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 89 | 338 | 0 |
SVSRLGIPKYEWWSEALHGVSYVGPGTHFSSVVPGATSFPQVILTAASFNTSLFVAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGE DPLLSSKYGSGYVKGLQQRDDGNPDGLKVAACCKHYTAYDLDNWKGVDRYHFNAVVTKQDMDDTFQPPFKSCVVDGNVASVMCSYNKVNGIPTCADPDLL SGVIRGEWKLNGYIVTDCDSIDVFYNSQHYTKTPEEAAAKAILAGLDLNC |
Full Sequence |
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Protein Sequence Length: 777 Download |
MASFCSQNRV PKVSVFLFFS LVCFLLFSSS HVVLAQSSPV FACDVVSNPS LASFGFCNTS 60 LGVSDRVVDL VKRLTLQEKI LFLVNSAGSV SRLGIPKYEW WSEALHGVSY VGPGTHFSSV 120 VPGATSFPQV ILTAASFNTS LFVAIGKVVS TEARAMYNVG LAGLTFWSPN INIFRDPRWG 180 RGQETPGEDP LLSSKYGSGY VKGLQQRDDG NPDGLKVAAC CKHYTAYDLD NWKGVDRYHF 240 NAVVTKQDMD DTFQPPFKSC VVDGNVASVM CSYNKVNGIP TCADPDLLSG VIRGEWKLNG 300 YIVTDCDSID VFYNSQHYTK TPEEAAAKAI LAGLDLNCGS FLGKHTEAAV TAGLVNESAI 360 DRAVSNNFAT LMRLGFFDGD PSKQLYGKLG PKDVCTAENQ ELAREAARQG IVLLKNTAGS 420 LPLSPTAIKN LAVIGPNANV TKTMIGNYEG TPCKYTTPLQ GLAALVATTY LPGCSNVACS 480 TAQVDDAKKI AAAADATVLV MGADLSIEAE SRDRVDILLP GQQQLLITAV ANASTGPVIL 540 VIMSGGGMDV SFAKTNDKIT SILWVGYPGE AGGAAIADII FGSYNPSGRL PMTWYPQSYV 600 DKVPMTNMNM RPDPSNGYPG RTYRFYTGET VYSFGDGLSY SEFSHELTQA PGLVSVPLEE 660 NHVCYSSECK SVAAAEQTCQ NLTFDVHLRI KNTGTTSGSH TVFLFSTPPS VHNSPQKHLV 720 GFEKVFLHAQ TDSHVGFKVD VCKDLSVVDE LGSKKVALGE HVLHIGSLKH SMTVRI* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-44 | 411 | 641 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 2.0e-58 | 91 | 475 | 391 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-63 | 84 | 366 | 287 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 5.0e-66 | 42 | 741 | 786 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 35 | 776 | 763 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAJ65922.1 | 0 | 1 | 776 | 1 | 757 | xylan 1,4-beta-xylosidase [Populus alba x Populus tremula] |
RefSeq | XP_002264183.1 | 0 | 11 | 776 | 201 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298197.1 | 0 | 38 | 776 | 1 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303181.1 | 0 | 1 | 776 | 1 | 773 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513707.1 | 0 | 26 | 776 | 26 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 125 | 766 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
PDB | 3u48_A | 0 | 125 | 766 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
PDB | 3u4a_B | 0 | 125 | 766 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
PDB | 3u4a_A | 0 | 125 | 766 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
PDB | 4i3g_B | 2e-36 | 64 | 464 | 51 | 428 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |