y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G225900.3 |
Family | GH1 |
Protein Properties | Length: 497 Molecular Weight: 56130.1 Isoelectric Point: 5.6058 |
Chromosome | Chromosome/Scaffold: 01 Start: 23696248 End: 23701511 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH1 | 48 | 478 | 0 |
RKSFPGDFIFGAAASAYQTEGHANKSCRGPSIWDTFTQDFPERIADGCNGDLGIDLYNRYESDLEEMKDMNMDAFRFSISWSRVIPSGKIRAGVNKDGIE FYNKLIDATIAKGLQPYATLFHWDVPQALEDKYGGFLSDNIVSDFRDFAELCFKEFGDRVKYWITLNEPQKFTGDGYDSGHFAPGRCSKWVDEKYCINGN SSTEPYIVAHNLLLSHAAAVHTYWEKYQASQNGKIGVTLNARWFEPYSNSTEDRNAAKRSLDFMLGWFLNPITYGDYPSSMRELVNDRLPTFSPLDSINL KGSLDFVGLNYYTAYYAANANSSSPDPRRYQTDSNCIITGYGEVVKTDVQLHHGTVMDLPRVEYHCTHLRNVVASIKNHGVQVKGYFVWSFADNFEFTDG YTIGFGLLYVNRTSNFTRIAKLSSHWFTEFL |
Full Sequence |
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Protein Sequence Length: 497 Download |
MAIPTGLLLL GMLFLMFSIA SAQIEMPRGI TEDFDTTCIT DLKFGLSRKS FPGDFIFGAA 60 ASAYQTEGHA NKSCRGPSIW DTFTQDFPER IADGCNGDLG IDLYNRYESD LEEMKDMNMD 120 AFRFSISWSR VIPSGKIRAG VNKDGIEFYN KLIDATIAKG LQPYATLFHW DVPQALEDKY 180 GGFLSDNIVS DFRDFAELCF KEFGDRVKYW ITLNEPQKFT GDGYDSGHFA PGRCSKWVDE 240 KYCINGNSST EPYIVAHNLL LSHAAAVHTY WEKYQASQNG KIGVTLNARW FEPYSNSTED 300 RNAAKRSLDF MLGWFLNPIT YGDYPSSMRE LVNDRLPTFS PLDSINLKGS LDFVGLNYYT 360 AYYAANANSS SPDPRRYQTD SNCIITGYGE VVKTDVQLHH GTVMDLPRVE YHCTHLRNVV 420 ASIKNHGVQV KGYFVWSFAD NFEFTDGYTI GFGLLYVNRT SNFTRIAKLS SHWFTEFLGD 480 QPANPVPLYF KRLNIA* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02998 | PLN02998 | 7.0e-112 | 37 | 478 | 476 | + beta-glucosidase | ||
PLN02814 | PLN02814 | 1.0e-113 | 46 | 478 | 474 | + beta-glucosidase | ||
TIGR03356 | BGL | 2.0e-119 | 52 | 474 | 452 | + beta-galactosidase. | ||
PLN02849 | PLN02849 | 6.0e-120 | 47 | 483 | 473 | + beta-glucosidase | ||
pfam00232 | Glyco_hydro_1 | 6.0e-143 | 47 | 477 | 469 | + Glycosyl hydrolase family 1. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI24820.1 | 0 | 46 | 478 | 45 | 519 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277198.1 | 0 | 19 | 478 | 1 | 504 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002298155.1 | 0 | 46 | 478 | 1 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002298156.1 | 0 | 46 | 478 | 1 | 477 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328320.1 | 0 | 46 | 488 | 14 | 502 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1cbg_A | 0 | 46 | 478 | 14 | 488 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
PDB | 3ptq_B | 0 | 46 | 478 | 29 | 503 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
PDB | 3ptq_A | 0 | 46 | 478 | 29 | 503 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
PDB | 3ptm_B | 0 | 46 | 478 | 29 | 503 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
PDB | 3ptm_A | 0 | 46 | 478 | 29 | 503 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |