Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G294700.1 |
Family | GH3 |
Protein Properties | Length: 778 Molecular Weight: 84936.5 Isoelectric Point: 6.2439 |
Chromosome | Chromosome/Scaffold: 01 Start: 29946390 End: 29949590 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 53 | 306 | 0 |
AGISRLGVPAYEWWSEALHGVASVGYGVHFNATVPGATSFPAVILSAASFNTTLWFKMGQVVSTEARAMYNVGLAGLTYWSPTINVFRDPRWGRGQETPG EDPLVVSKYAVNYVRGLQEVGEEGKSTGNRLKVSSCCKHYTAYDIDKWKGVDRFHFDAKVTKQDLEDTFQPPFKSCVEEGRVSSVMCSYNRVNGIPTCAD PDLLKGVIREQWNLDGYIVSDCDSIEVYYDRIKYAATPEDAVTLALKAGLNMNC |
Full Sequence |
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Protein Sequence Length: 778 Download |
MLEVYNFACD KNIPETSQFP FCNTSLSYEN RAKDLISRLT LQEKAQQLGN HAAGISRLGV 60 PAYEWWSEAL HGVASVGYGV HFNATVPGAT SFPAVILSAA SFNTTLWFKM GQVVSTEARA 120 MYNVGLAGLT YWSPTINVFR DPRWGRGQET PGEDPLVVSK YAVNYVRGLQ EVGEEGKSTG 180 NRLKVSSCCK HYTAYDIDKW KGVDRFHFDA KVTKQDLEDT FQPPFKSCVE EGRVSSVMCS 240 YNRVNGIPTC ADPDLLKGVI REQWNLDGYI VSDCDSIEVY YDRIKYAATP EDAVTLALKA 300 GLNMNCGDFL PRYTENAVKL NKIEESIVDQ ALIYNYIVLM RLGFFDGDPK LHPFGNLGPS 360 DVCTEEHQEL ALDAAKQGIV LLDNKGALPL SKNATKNLAV IGPNGNATVA MISIYAGIPC 420 EYTTPLQGLQ KYISSVTYAA GCPFVNCTDE SLAGPATKAA ATADVVVLVM GLDQSIEQED 480 LDRENLILPG YQEKLVKDVA NATNGTMILV IMSASPVDIS FAKNESKVGG ILWVGYPGQA 540 GGDAIAQVIF GDHNPAGRSP FTWYPKEYSD QVPMTNMNLR ANATDNFPGR TYRFYTGKPL 600 YEFGHGLSYS TFSKFVISAP STLLVPLKSS LNPSGIPSVY SSKQDPYPNG QAIDVSSVNC 660 TNLQHVLVIG VRNNGPMNGD HVVLIFWKPP KSAEITGPPN MQLAAFDRVH VKKGNTNNIT 720 LAVDVCKGLS LVDSEGQRKL VTGQHTFIIG SPSEHQVRYH LIVRLAQNGR MGGFTFM* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-51 | 379 | 611 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 7.0e-56 | 22 | 406 | 401 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 1.0e-63 | 50 | 331 | 286 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-69 | 23 | 725 | 757 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 14 | 757 | 752 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB02547.1 | 0 | 6 | 766 | 26 | 774 | beta-1,4-xylosidase [Arabidopsis thaliana] |
EMBL | CAN82161.1 | 0 | 5 | 777 | 25 | 798 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_188596.1 | 0 | 6 | 766 | 26 | 774 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
RefSeq | XP_002264114.1 | 0 | 5 | 768 | 49 | 813 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002527511.1 | 0 | 6 | 773 | 24 | 792 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 4.2039e-45 | 90 | 723 | 91 | 696 | A Chain A, Crystal Structure Of Bacillus Subtilis Udp-glcnac 2-epimerase In Complex With Udp-glcnac And Udp |
PDB | 3u48_A | 4.2039e-45 | 90 | 723 | 91 | 696 | A Chain A, Crystal Structure Of Bacillus Subtilis Udp-glcnac 2-epimerase In Complex With Udp-glcnac And Udp |
PDB | 3u4a_B | 1.96182e-44 | 90 | 723 | 91 | 696 | A Chain A, Crystal Structure Of Bacillus Subtilis Udp-glcnac 2-epimerase In Complex With Udp-glcnac And Udp |
PDB | 3u4a_A | 1.96182e-44 | 90 | 723 | 91 | 696 | A Chain A, Crystal Structure Of Bacillus Subtilis Udp-glcnac 2-epimerase In Complex With Udp-glcnac And Udp |
PDB | 2x41_A | 7e-39 | 31 | 613 | 3 | 604 | A Chain A, Crystal Structure Of Bacillus Subtilis Udp-glcnac 2-epimerase In Complex With Udp-glcnac And Udp |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES793662 | 344 | 266 | 608 | 0 |
DT755899 | 298 | 48 | 345 | 0 |
GW867030 | 313 | 35 | 347 | 0 |
BX838810 | 313 | 7 | 319 | 0 |
DY932965 | 307 | 19 | 325 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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