Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G314600.1 |
Family | CE8 |
Protein Properties | Length: 144 Molecular Weight: 15495.4 Isoelectric Point: 5.67 |
Chromosome | Chromosome/Scaffold: 01 Start: 32041091 End: 32042036 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 17 | 98 | 4.5e-30 |
PAVAAMVTGDKTAFYQCGFAGVQNTLLDDGGRHYFKRCSIQGAVDFIFVSGQSIYEDCSIQALGGFIPAQGRTNPNDANGFL |
Full Sequence |
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Protein Sequence Length: 144 Download |
MSLADYIVVR SMTFVVPAVA AMVTGDKTAF YQCGFAGVQN TLLDDGGRHY FKRCSIQGAV 60 DFIFVSGQSI YEDCSIQALG GFIPAQGRTN PNDANGFLNH ITFAEYGNFG PGADTSKRVS 120 WAKKLSIQSL EELTSKSFIN SDN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 2.0e-28 | 3 | 140 | 203 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-28 | 18 | 140 | 177 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 6.0e-29 | 3 | 139 | 195 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-33 | 2 | 142 | 212 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-71 | 1 | 143 | 214 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 9.99967e-42 | 2 | 140 | 112 | 319 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 2e-40 | 2 | 140 | 112 | 323 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_197400.1 | 4.00001e-40 | 2 | 140 | 107 | 318 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 1 | 143 | 78 | 282 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 1 | 143 | 125 | 329 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0.00000000007 | 18 | 98 | 114 | 200 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 0.00000007 | 18 | 76 | 130 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000007 | 18 | 76 | 130 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.00000007 | 18 | 76 | 130 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG236231 | 180 | 16 | 143 | 2.99878e-43 |
JG248256 | 180 | 16 | 143 | 3.9937e-43 |
AW036464 | 191 | 2 | 121 | 3e-33 |
DK563509 | 211 | 4 | 141 | 4e-32 |
EE476551 | 118 | 4 | 98 | 5e-31 |
Sequence Alignments (This image is cropped. Click for full image.) |
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