y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G315700.1 |
Family | CBM43 |
Protein Properties | Length: 193 Molecular Weight: 19956.8 Isoelectric Point: 7.7328 |
Chromosome | Chromosome/Scaffold: 01 Start: 32127724 End: 32129943 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 34 | 115 | 1e-33 |
WCVARSDASTQALQTALDYACASGADCTPIQSSGLCFLPNTIQAHASYAFNSYFQRKAMAPGSCDFSGTASASKSDPSYGSC |
Full Sequence |
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Protein Sequence Length: 193 Download |
MAKVLSNKLF FVFFAIHILG SAVFLPAVVV EGTWCVARSD ASTQALQTAL DYACASGADC 60 TPIQSSGLCF LPNTIQAHAS YAFNSYFQRK AMAPGSCDFS GTASASKSDP SYGSCMYPSS 120 LSTAGGTGTT TSTTPAANPN FQTPPSSGGT TGLNPGMTPL PDNSKASLGF MVTVTLLLLC 180 HLLVFSFTFR PM* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-22 | 33 | 104 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-40 | 33 | 117 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17645.1 | 0 | 28 | 185 | 24 | 188 | unknown [Glycine max] |
RefSeq | NP_193096.5 | 0 | 34 | 185 | 61 | 229 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002267551.1 | 0 | 33 | 192 | 49 | 217 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300169.1 | 0 | 33 | 111 | 1 | 79 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518089.1 | 0 | 13 | 121 | 7 | 114 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-24 | 26 | 119 | 5 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |