| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G321900.1 |
| Family | CBM43 |
| Protein Properties | Length: 417 Molecular Weight: 46089.3 Isoelectric Point: 8.3186 |
| Chromosome | Chromosome/Scaffold: 01 Start: 32644652 End: 32646541 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| CBM43 | 327 | 410 | 2.9e-27 |
| WCIAAPEVNLTELESALTFACNQGNGTCDSLTPGKECYEPLSVTWHASYAFSSYWAKFRSQGANCYFNGLAQQTTSNPSRGSCQ | |||
| GH17 | 3 | 300 | 0 |
| AGSVKLYDANPEILRLLARTNIHVSIMVRNDEIINIAANQTTANKWVEDNVLRYYPDTIIRTILVGNEVLSYSSDAGKQIWNHLVPAMRRIKISLRAQDI RNIKVGTPLAMDVLQTAFPPSNGTFRSDISTSVMVPLLNFLNSTKSFFFMDAYPYFPWSANPINISLNFALFQSNIKYTDPGTGLVYTNLLDQMLDSLVF AMTKLGYPDVRLSIAETGWPNAGDIDEAGANIKNAATYNRNLVRKMTASNPTGTPARPGSLIPTFIFALYDENRKTGPGTERHWGLLHPNGTSIYQID | |||
| Full Sequence |
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| Protein Sequence Length: 417 Download |
| MKAGSVKLYD ANPEILRLLA RTNIHVSIMV RNDEIINIAA NQTTANKWVE DNVLRYYPDT 60 IIRTILVGNE VLSYSSDAGK QIWNHLVPAM RRIKISLRAQ DIRNIKVGTP LAMDVLQTAF 120 PPSNGTFRSD ISTSVMVPLL NFLNSTKSFF FMDAYPYFPW SANPINISLN FALFQSNIKY 180 TDPGTGLVYT NLLDQMLDSL VFAMTKLGYP DVRLSIAETG WPNAGDIDEA GANIKNAATY 240 NRNLVRKMTA SNPTGTPARP GSLIPTFIFA LYDENRKTGP GTERHWGLLH PNGTSIYQID 300 LTGKRASSDY ETLPPAQNNV PYKGKLWCIA APEVNLTELE SALTFACNQG NGTCDSLTPG 360 KECYEPLSVT WHASYAFSSY WAKFRSQGAN CYFNGLAQQT TSNPSRGSCQ FPSVTI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-15 | 326 | 397 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-31 | 326 | 411 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-101 | 2 | 300 | 300 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 1 | 416 | 61 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| GenBank | ABK28569.1 | 0 | 1 | 416 | 61 | 476 | unknown [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 1 | 416 | 53 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189019.1 | 0 | 1 | 416 | 61 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002298669.1 | 0 | 1 | 416 | 47 | 462 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 6 | 301 | 30 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 6 | 301 | 30 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 6 | 301 | 30 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 6 | 302 | 31 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 6 | 302 | 31 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX051579 | 288 | 130 | 417 | 0 |
| DT572251 | 304 | 62 | 364 | 0 |
| EX291357 | 339 | 52 | 388 | 0 |
| EX050956 | 294 | 123 | 416 | 0 |
| EX050461 | 271 | 127 | 397 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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