Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G339500.1 |
Family | PL1 |
Protein Properties | Length: 404 Molecular Weight: 44950.5 Isoelectric Point: 7.9594 |
Chromosome | Chromosome/Scaffold: 01 Start: 34316961 End: 34319005 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 116 | 322 | 0 |
VIQDEPLWIIFKRDMVIQLRQELVMNSYKTIDGRGASVHIAGGPCITIHYATNIIIHGIHIHDCKQGGNGDIRDSPRHSGWWTPSDGDGVSIFASKHIWV DHCSLSNCHDGLIDAIHGSTAITISNNFMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINS QGNRFLA |
Full Sequence |
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Protein Sequence Length: 404 Download |
MSRLAILLIF FFSAPAPHFV FSSSIQDPEL VVQEVHRSIN ASRRNLGYLS CGTGNPIDDC 60 WRCDPNWERN RQRLADCAIG FGKNAIGGRN GRIYVVTDSG NDDAVNPKPG TLRHAVIQDE 120 PLWIIFKRDM VIQLRQELVM NSYKTIDGRG ASVHIAGGPC ITIHYATNII IHGIHIHDCK 180 QGGNGDIRDS PRHSGWWTPS DGDGVSIFAS KHIWVDHCSL SNCHDGLIDA IHGSTAITIS 240 NNFMTHHDKV MLLGHSDSYT QDKDMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 EMYAIGGSAS PTINSQGNRF LAPNRRFNKE VTKHEDAPES EWRHWNWRSE GDLMLNGAYF 360 RQSGAGASSS YARAYSLSAR PSSLVGSMTL TSGVLNCRKG SRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-29 | 142 | 320 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-74 | 136 | 320 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-81 | 129 | 324 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 11 | 403 | 13 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | XP_002268976.1 | 0 | 22 | 403 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 1 | 403 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 16 | 403 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 4 | 403 | 5 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 55 | 395 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 55 | 395 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 124 | 322 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000001 | 212 | 393 | 154 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000001 | 212 | 393 | 154 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |