Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G346800.1 |
Family | GH28 |
Protein Properties | Length: 487 Molecular Weight: 52486.2 Isoelectric Point: 6.8509 |
Chromosome | Chromosome/Scaffold: 01 Start: 35254323 End: 35257095 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 458 | 0 |
AACKVEASTMIVPSGYVFLLHSVSFSGPGCEADIVFQLDGKIIAPTTPGAWKSGLLQWIEFTKLNGITIQGKGIIDGQGSVWWNNLPTNNLEDSEGVMNA KMPGTKPTALRFYGSTRVIVTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGP GHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTWQGGSGSVQGVTFSNIQVSGVKTPIMIDQFYCDRSKCQNESSAVAVSDINYINIKGTYASK PVHLACSDDLPCTGISFSAIELNPVQEDSQPFCWN |
Full Sequence |
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Protein Sequence Length: 487 Download |
MNFFNLKNYS LIILNIVLFL WTSRFETCHA REGHQWRLKG KFPPAHSVLN VEKEKGHGST 60 AGSSHQHHGR SAMSKFAGNN YMLADDTMST QQEGSSKAFN VLEFGAKGDG KTDDSEAFGA 120 TWAAACKVEA STMIVPSGYV FLLHSVSFSG PGCEADIVFQ LDGKIIAPTT PGAWKSGLLQ 180 WIEFTKLNGI TIQGKGIIDG QGSVWWNNLP TNNLEDSEGV MNAKMPGTKP TALRFYGSTR 240 VIVTGITIQN SPQTHLKFDD CTTVQVSDFK AASPENSPNT DGIHLENSHD VLIYSSDLAC 300 GDDCVSIQTG CSQVYIHNVN CGPGHGISIG GLGRDNSKAC VSNVTVRDVA MLNTLTGVRI 360 KTWQGGSGSV QGVTFSNIQV SGVKTPIMID QFYCDRSKCQ NESSAVAVSD INYINIKGTY 420 ASKPVHLACS DDLPCTGISF SAIELNPVQE DSQPFCWNTF GELRSTTVPP INCLKMGKSR 480 KPVVNC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-72 | 99 | 462 | 370 | + polygalacturonase | ||
PLN03003 | PLN03003 | 7.0e-75 | 95 | 476 | 392 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-77 | 130 | 445 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-82 | 100 | 445 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-93 | 95 | 470 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO24262.1 | 0 | 4 | 482 | 6 | 470 | putative style polygalacturonase [Turnera subulata] |
GenBank | ABD62081.1 | 0 | 4 | 482 | 6 | 470 | putative style polygalacturonase [Turnera subulata] |
DDBJ | BAH56488.1 | 0 | 1 | 478 | 2 | 494 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002298533.1 | 0 | 88 | 486 | 1 | 386 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521450.1 | 0 | 22 | 486 | 22 | 466 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-24 | 174 | 445 | 58 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-24 | 174 | 445 | 58 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-24 | 174 | 445 | 58 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-24 | 174 | 445 | 58 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-24 | 174 | 445 | 58 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |