| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G351800.1 |
| Family | GT5 |
| Protein Properties | Length: 880 Molecular Weight: 100515 Isoelectric Point: 6.3685 |
| Chromosome | Chromosome/Scaffold: 01 Start: 35898628 End: 35908412 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 380 | 862 | 0 |
| IIHIAAEMAPVAKVGGLGDVVTGLCKALQKRGHLVEIVLPKYDCMQYDRIHNLRALDVVVESYFDGKLYKNKIWVGTVEGLPVYFIEPQHPEKFFWRGQF YGEHDDFRRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNSAHD RVNPVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLSFHSKKFVGILNGIDTDAWNPATDTSLKVQYNVNDLQGKTENKIALRKFLGLSNADVRQPM VGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFESHHHIRLILKYDESLSHSIFAASDIFIIPSIFEPCGLTQMIAMRYGS IPIVRKTGGLNDSVFDVDDDTVPPQFRNGFTFSTPDEHGVNSALDRAFNYYRNNTEVWQQLVQKDMNMDFSWELSTSQYEELY | |||
| Full Sequence |
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| Protein Sequence Length: 880 Download |
| MCMLDTLLLN KARVFALDDL ERIFHEKDKL QGEINVLEMR LAENDAKMKV AAQEKIRVEL 60 LEAQLEKLRN ELAQRGATER SVFDLYESQN NVFNKEAPLL QNNTLLQNSS VHSLSEELSL 120 LRSENMSLKN DIEALREELS NVKNTDERVA ILVKQHSLMK SSLQDLESKL IASEEDVSKL 180 SSLKVECKDL WEKVDTLQAL LDKATKRADQ AILVLQQNQD LRKKVDKLEK SLEEAVVYKL 240 SSEKLQQYNE LMQQKMKLLE EHLQRSDEEI HSYVRLYQDS VQEFQDTLKS LKEESKKRAL 300 DEPIDDMPWE FWSHLLLIID GWLLEKKIST DDAKLLREMV WKRDGRICEA YMESREKNER 360 EAVSRFLKLT SSPKSSGLSI IHIAAEMAPV AKVGGLGDVV TGLCKALQKR GHLVEIVLPK 420 YDCMQYDRIH NLRALDVVVE SYFDGKLYKN KIWVGTVEGL PVYFIEPQHP EKFFWRGQFY 480 GEHDDFRRFS FFSRAALELL LQSGKKPDII HCHDWQTAFV APLYWDLYAP KGLNSARICF 540 TCHNFEYQGT APASELASCG LDVHQLNRPD RMQDNSAHDR VNPVKGAVVF SNIVTTVSPT 600 YAQEVRTAEG GKGLHSTLSF HSKKFVGILN GIDTDAWNPA TDTSLKVQYN VNDLQGKTEN 660 KIALRKFLGL SNADVRQPMV GCITRLVPQK GVHLIRHAIY RTLELGGQFV LLGSSPVAHI 720 QREFEGIANH FESHHHIRLI LKYDESLSHS IFAASDIFII PSIFEPCGLT QMIAMRYGSI 780 PIVRKTGGLN DSVFDVDDDT VPPQFRNGFT FSTPDEHGVN SALDRAFNYY RNNTEVWQQL 840 VQKDMNMDFS WELSTSQYEE LYLKSVARAR VAANRAQGL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 1.0e-150 | 374 | 862 | 496 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 5 | 865 | 861 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 378 | 862 | 488 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 380 | 862 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 378 | 862 | 487 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_193558.3 | 0 | 139 | 876 | 303 | 1040 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002274716.1 | 0 | 5 | 873 | 156 | 1009 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298514.1 | 0 | 5 | 875 | 45 | 887 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519725.1 | 0.00000000005 | 5 | 104 | 184 | 273 | starch synthase, putative [Ricinus communis] |
| RefSeq | XP_002519725.1 | 0 | 190 | 876 | 312 | 998 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 0 | 378 | 869 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 378 | 869 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 378 | 869 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 0 | 378 | 869 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3d1j_A | 0 | 378 | 864 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CF828776 | 286 | 503 | 788 | 0 |
| GO851132 | 333 | 453 | 785 | 0 |
| EL448877 | 316 | 306 | 621 | 0 |
| GW865616 | 298 | 484 | 781 | 0 |
| CB893818 | 281 | 377 | 657 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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