Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G351800.2 |
Family | GT5 |
Protein Properties | Length: 852 Molecular Weight: 97291.1 Isoelectric Point: 6.4871 |
Chromosome | Chromosome/Scaffold: 01 Start: 35898628 End: 35908412 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 352 | 834 | 0 |
IIHIAAEMAPVAKVGGLGDVVTGLCKALQKRGHLVEIVLPKYDCMQYDRIHNLRALDVVVESYFDGKLYKNKIWVGTVEGLPVYFIEPQHPEKFFWRGQF YGEHDDFRRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNSAHD RVNPVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLSFHSKKFVGILNGIDTDAWNPATDTSLKVQYNVNDLQGKTENKIALRKFLGLSNADVRQPM VGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAHIQREFEGIANHFESHHHIRLILKYDESLSHSIFAASDIFIIPSIFEPCGLTQMIAMRYGS IPIVRKTGGLNDSVFDVDDDTVPPQFRNGFTFSTPDEHGVNSALDRAFNYYRNNTEVWQQLVQKDMNMDFSWELSTSQYEELY |
Full Sequence |
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Protein Sequence Length: 852 Download |
MCMLDTLLLN KARVFALDDL ERIFHEKDKL QGEINVLEMR LAENDAKMKV AAQEKIRVEL 60 LEAQLEKLRN ELAQRGATER SVVHSLSEEL SLLRSENMSL KNDIEALREE LSNVKNTDER 120 VAILVKQHSL MKSSLQDLES KLIASEEDVS KLSSLKVECK DLWEKVDTLQ ALLDKATKRA 180 DQAILVLQQN QDLRKKVDKL EKSLEEAVVY KLSSEKLQQY NELMQQKMKL LEEHLQRSDE 240 EIHSYVRLYQ DSVQEFQDTL KSLKEESKKR ALDEPIDDMP WEFWSHLLLI IDGWLLEKKI 300 STDDAKLLRE MVWKRDGRIC EAYMESREKN EREAVSRFLK LTSSPKSSGL SIIHIAAEMA 360 PVAKVGGLGD VVTGLCKALQ KRGHLVEIVL PKYDCMQYDR IHNLRALDVV VESYFDGKLY 420 KNKIWVGTVE GLPVYFIEPQ HPEKFFWRGQ FYGEHDDFRR FSFFSRAALE LLLQSGKKPD 480 IIHCHDWQTA FVAPLYWDLY APKGLNSARI CFTCHNFEYQ GTAPASELAS CGLDVHQLNR 540 PDRMQDNSAH DRVNPVKGAV VFSNIVTTVS PTYAQEVRTA EGGKGLHSTL SFHSKKFVGI 600 LNGIDTDAWN PATDTSLKVQ YNVNDLQGKT ENKIALRKFL GLSNADVRQP MVGCITRLVP 660 QKGVHLIRHA IYRTLELGGQ FVLLGSSPVA HIQREFEGIA NHFESHHHIR LILKYDESLS 720 HSIFAASDIF IIPSIFEPCG LTQMIAMRYG SIPIVRKTGG LNDSVFDVDD DTVPPQFRNG 780 FTFSTPDEHG VNSALDRAFN YYRNNTEVWQ QLVQKDMNMD FSWELSTSQY EELYLKSVAR 840 ARVAANRAQG L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 2.0e-151 | 346 | 834 | 496 | + synthase/transferase | ||
PLN02939 | PLN02939 | 0 | 5 | 837 | 833 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 0 | 350 | 834 | 488 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 352 | 834 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PRK00654 | glgA | 0 | 350 | 834 | 487 | + glycogen synthase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_193558.3 | 0 | 111 | 848 | 303 | 1040 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002274716.1 | 0 | 5 | 845 | 156 | 1009 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298514.1 | 0 | 5 | 847 | 45 | 887 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519725.1 | 0.000000007 | 5 | 50 | 184 | 229 | starch synthase, putative [Ricinus communis] |
RefSeq | XP_002519725.1 | 0 | 162 | 848 | 312 | 998 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rzv_B | 0 | 350 | 841 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 350 | 841 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 350 | 841 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 1rzu_A | 0 | 350 | 841 | 1 | 479 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 3d1j_A | 0 | 350 | 836 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CF828776 | 286 | 475 | 760 | 0 |
GO851132 | 333 | 425 | 757 | 0 |
EL448877 | 316 | 278 | 593 | 0 |
GW865616 | 298 | 456 | 753 | 0 |
EG664148 | 277 | 365 | 641 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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