Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G353400.2 |
Family | CBM43 |
Protein Properties | Length: 208 Molecular Weight: 21192.7 Isoelectric Point: 4.1623 |
Chromosome | Chromosome/Scaffold: 01 Start: 36121231 End: 36123129 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 116 | 198 | 1.1e-34 |
WCIASPTASETALQVAIDYACGYGGTDCSALQPGGSCYNPNTIRDHASYAFNSYYQKNPVPTSCVFGGTAQLTTTDPSSGNCH |
Full Sequence |
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Protein Sequence Length: 208 Download |
MPILEPIQKY EVVGDENRML ISYSETAIQL DAVTGGVPII NPTNPGSGTT PVVNPVDSPP 60 TPIGTNPIPT TPPAGMVPPA GMVPPATMNP PPATMNPPAT TNPPATTNPT SSGGAWCIAS 120 PTASETALQV AIDYACGYGG TDCSALQPGG SCYNPNTIRD HASYAFNSYY QKNPVPTSCV 180 FGGTAQLTTT DPSSGNCHYA SSPTTPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-22 | 116 | 185 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-39 | 116 | 199 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 0 | 2 | 199 | 30 | 230 | unknown [Populus trichocarpa] |
EMBL | CBI30817.1 | 0 | 112 | 205 | 31 | 124 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002271903.1 | 0 | 6 | 205 | 27 | 219 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331855.1 | 0 | 114 | 193 | 1 | 80 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519744.1 | 0 | 4 | 201 | 24 | 200 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-17 | 111 | 199 | 8 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN550472 | 180 | 27 | 206 | 0 |
EX293226 | 196 | 8 | 202 | 0 |
EX270033 | 196 | 8 | 202 | 0 |
GE635169 | 89 | 113 | 201 | 0 |
FQ459651 | 95 | 111 | 205 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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