y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G364200.1 |
Family | CE8 |
Protein Properties | Length: 363 Molecular Weight: 39874.4 Isoelectric Point: 8.964 |
Chromosome | Chromosome/Scaffold: 01 Start: 37687369 End: 37689053 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 64 | 354 | 0 |
IVVDKNGGADSLTVQGAIDLVPQYNTQRVKIYILPGIYREKVLVPRTKPYISMIGDQNRVCDTIISWNNKASDADSNGTALGTYRSASVTIESDYFCATG ITFENTVVAEPGGQGMQAVAMRVSSKKAFFYKVRVLGAQDTLLDETGTHYFYKCHIQGSIDFIFGRAKSLFQDCVLQSTAKKSGAIAAHHRDSPNEDTGF SFVGCVINGTGKILLGRAWGNYSRTIYSYCYLNDIIDPSGWSDWNYPYRQKTVVFGEYECSGRGTNAGGRVPWLKPLKYEDARPYLDIGFI |
Full Sequence |
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Protein Sequence Length: 363 Download |
MGKSVNVGGG FLVVLLCFLG CLQVGLAQSS ANAKRIAISW DDMKMNKRGA RVSSKYDFNG 60 SRVIVVDKNG GADSLTVQGA IDLVPQYNTQ RVKIYILPGI YREKVLVPRT KPYISMIGDQ 120 NRVCDTIISW NNKASDADSN GTALGTYRSA SVTIESDYFC ATGITFENTV VAEPGGQGMQ 180 AVAMRVSSKK AFFYKVRVLG AQDTLLDETG THYFYKCHIQ GSIDFIFGRA KSLFQDCVLQ 240 STAKKSGAIA AHHRDSPNED TGFSFVGCVI NGTGKILLGR AWGNYSRTIY SYCYLNDIID 300 PSGWSDWNYP YRQKTVVFGE YECSGRGTNA GGRVPWLKPL KYEDARPYLD IGFIGGEQWL 360 KL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-97 | 57 | 361 | 305 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-98 | 62 | 360 | 304 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 4.0e-110 | 60 | 360 | 303 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-119 | 54 | 362 | 311 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 28 | 362 | 335 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 38 | 362 | 34 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 13 | 362 | 10 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 16 | 362 | 10 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 45 | 362 | 1 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 2 | 362 | 21 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.4013e-45 | 64 | 361 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-35 | 65 | 361 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000000009 | 63 | 237 | 33 | 215 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000006 | 76 | 252 | 20 | 206 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000006 | 76 | 252 | 20 | 206 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |