Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G367800.1 |
Family | PL1 |
Protein Properties | Length: 318 Molecular Weight: 35610.4 Isoelectric Point: 6.6915 |
Chromosome | Chromosome/Scaffold: 01 Start: 38034079 End: 38036097 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 119 | 312 | 0 |
IIFDKDMVINLKEELFMNSHKTIDGRGQNIQIADGPCVTIRNVSNIIIHNIYIHGCVPGGNVVVRDSTNHHGLRGKSDGDGISIFAARDVWIDHCTLANC RDGLIDAVFGSTSITISNNYMFNHNEVMLMGHSDDFIDDKNMLVTIAFNFFGENLVQRMPRCRHGYFHIVNNIYTGWEKYAIGGSASPTINSKG |
Full Sequence |
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Protein Sequence Length: 318 Download |
MPAFFSLFLL VMILHATIAF SRHPPVRISE ATKWSSTRRQ LGKNTCRTGN PIDDCWRCDP 60 DWETNRKVLA DCAFGFGRNA VGGRDGNLYV VTDSDNDDPV NPIPGTLRYG VIQEEPLWII 120 FDKDMVINLK EELFMNSHKT IDGRGQNIQI ADGPCVTIRN VSNIIIHNIY IHGCVPGGNV 180 VVRDSTNHHG LRGKSDGDGI SIFAARDVWI DHCTLANCRD GLIDAVFGST SITISNNYMF 240 NHNEVMLMGH SDDFIDDKNM LVTIAFNFFG ENLVQRMPRC RHGYFHIVNN IYTGWEKYAI 300 GGSASPTINS KGMFLWH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 137 | 305 | 183 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-59 | 130 | 312 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-66 | 124 | 312 | 200 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF19195.1 | 0 | 3 | 312 | 2 | 321 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
GenBank | ABV32549.1 | 0 | 14 | 312 | 26 | 327 | pectase lyase [Prunus persica] |
RefSeq | XP_002265729.1 | 0 | 5 | 312 | 4 | 315 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317359.1 | 0 | 35 | 312 | 3 | 280 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522747.1 | 0 | 1 | 312 | 1 | 311 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 50 | 312 | 2 | 265 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 50 | 312 | 2 | 265 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 119 | 306 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000008 | 133 | 292 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000003 | 130 | 300 | 73 | 254 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |