Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G377700.1 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 43321.7 Isoelectric Point: 9.0491 |
Chromosome | Chromosome/Scaffold: 01 Start: 39325651 End: 39327613 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 385 | 0 |
WSEACQWHGKAMVLIPRGVYILDSVLFLGECNGYMAFNLKGILKPKGILQTSDQWITFRYIKGFFLGGGGTLDGEGYKHWNRHDCLKNHNCHPLAISLRL EFIQNGMVRYIRSINSQNAHMSLFGCVNLNMSNLRLSAPGDSPNTDGIKIGSSEEIKISKTRIGTGDDCVAILSGSKNINISQVHCGPGHGISVGSMGGE GSVTESVVGVTVKDCTFNGTSDGTRIKTWASSTAGVASNFIYENIRMMNVGNPIIIDQDYCPYPPCGMKTPSRIQIKDITFNNIWGTSESNVAVTLNCSR TVPCKNILLKDISFFHGRGGSVRSLCSNARG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MGLILAFVRV LFLTFLLVWY TDAGASNGYK VFNVKRYGAV SDGKTENNKA FLKAWSEACQ 60 WHGKAMVLIP RGVYILDSVL FLGECNGYMA FNLKGILKPK GILQTSDQWI TFRYIKGFFL 120 GGGGTLDGEG YKHWNRHDCL KNHNCHPLAI SLRLEFIQNG MVRYIRSINS QNAHMSLFGC 180 VNLNMSNLRL SAPGDSPNTD GIKIGSSEEI KISKTRIGTG DDCVAILSGS KNINISQVHC 240 GPGHGISVGS MGGEGSVTES VVGVTVKDCT FNGTSDGTRI KTWASSTAGV ASNFIYENIR 300 MMNVGNPIII DQDYCPYPPC GMKTPSRIQI KDITFNNIWG TSESNVAVTL NCSRTVPCKN 360 ILLKDISFFH GRGGSVRSLC SNARGTSYGR QTPPSCF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-58 | 30 | 397 | 384 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-59 | 59 | 383 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-61 | 33 | 393 | 368 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-67 | 25 | 397 | 377 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-94 | 27 | 396 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 28 | 396 | 31 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 28 | 396 | 31 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 1 | 397 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 30 | 396 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 5 | 397 | 1 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 69 | 368 | 59 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-18 | 21 | 388 | 10 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 8e-17 | 120 | 347 | 74 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 120 | 347 | 74 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 120 | 347 | 74 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |