y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.001G461700.1 |
Family | AA7 |
Protein Properties | Length: 534 Molecular Weight: 59998.6 Isoelectric Point: 8.2572 |
Chromosome | Chromosome/Scaffold: 01 Start: 49540460 End: 49542256 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA7 | 67 | 527 | 0 |
RFNTSATPKPLVIVTPLNVAHIQAAITCSQKHGLQIRVRSGGHDYEGLSYVAVIPFVVVDLINMRTVTVDVANKTAWVQGGATLGEVYYRIAEKSRTLAF PAGVCPTVGVGGHISGGGTGMIMRKYGLAVDHIIDAQLIDVKGRILDRASMGEDLFWAIRGGGGNTFGVVVAWKLELVPIPASVTVFNVTRILMKEDATK LIHQWQYAIEKFDEDLFSRIFIWRSANSTQEGKPMIQAAFTSLFLGGVDRLLSYMQESFPELGLVREDCIEMSWIESTVYFAQFPRNTSLEVLLNRGPRS TIFFKGKTDFVKEPIPKTALEGIWERLDQVDAESAELQFTAYGGKMNEIAESSTPFPHRAGTLYQIHYAISWDEEGIEAYAKYISWIRRLYSYMASYVSK NPRQAYVNYRDLDLGVNNLGNTSYRQASIWGTKYFKNNFDRLVRVKTAVDPANFFRNEQSI |
Full Sequence |
---|
Protein Sequence Length: 534 Download |
MNSLSSLMFP FLFLFLFSFS WVASADRHED FLQCLQYQNS NAISKVIYTP INSSYSSVLQ 60 FSIRNGRFNT SATPKPLVIV TPLNVAHIQA AITCSQKHGL QIRVRSGGHD YEGLSYVAVI 120 PFVVVDLINM RTVTVDVANK TAWVQGGATL GEVYYRIAEK SRTLAFPAGV CPTVGVGGHI 180 SGGGTGMIMR KYGLAVDHII DAQLIDVKGR ILDRASMGED LFWAIRGGGG NTFGVVVAWK 240 LELVPIPASV TVFNVTRILM KEDATKLIHQ WQYAIEKFDE DLFSRIFIWR SANSTQEGKP 300 MIQAAFTSLF LGGVDRLLSY MQESFPELGL VREDCIEMSW IESTVYFAQF PRNTSLEVLL 360 NRGPRSTIFF KGKTDFVKEP IPKTALEGIW ERLDQVDAES AELQFTAYGG KMNEIAESST 420 PFPHRAGTLY QIHYAISWDE EGIEAYAKYI SWIRRLYSYM ASYVSKNPRQ AYVNYRDLDL 480 GVNNLGNTSY RQASIWGTKY FKNNFDRLVR VKTAVDPANF FRNEQSIPPL SSW* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam08031 | BBE | 3.0e-19 | 471 | 528 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 4.0e-23 | 76 | 213 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 3.0e-23 | 76 | 530 | 471 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299020.1 | 0 | 1 | 533 | 1 | 533 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299022.1 | 0 | 8 | 533 | 1 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002300557.1 | 0 | 1 | 533 | 1 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317695.1 | 0 | 1 | 533 | 1 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 21 | 533 | 21 | 531 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 25 | 530 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 28 | 530 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 28 | 530 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 29 | 530 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 29 | 530 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |