Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G463000.1 |
Family | GH28 |
Protein Properties | Length: 470 Molecular Weight: 50982.1 Isoelectric Point: 4.5067 |
Chromosome | Chromosome/Scaffold: 01 Start: 49715193 End: 49718151 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 417 | 0 |
TACATPESVFLVPSEHHYLVNATRFKGPCEDRFVIQIDGTIVAPDEPKNWDPDHARQWLEFSKLNGVLFQGNGVIDGSGSKWWASSCKKNKTNPCRGAPT ALTIDSSSSVKVKGLTIKNSQQMHFVISKSASVRISQVSVSAPGDSPNTDGIHITQSTNVVLQDCKIGTGDDCISIVNGSSGIKMKRIYCGPGHGVSIGS LGKDNSTGIVAKVVLDTAFISETTNGVRIKTWQGGNGYVRGVRFENVRMDNVDNPIIIDQFYCDSPASCQNKTSAVKISEIMYRNISGTTKSEKAMTFAC SDSVPCSNIVLSNVNLEMEDSTVETYCNSA |
Full Sequence |
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Protein Sequence Length: 470 Download |
MDKLFIITLL GLLILANGVA ENMVFNNFAI LEELESFEID EENDVVLFDI PSWTSERGGK 60 VLVNVDSFGA VGDGISDDTQ AFVKAWETAC ATPESVFLVP SEHHYLVNAT RFKGPCEDRF 120 VIQIDGTIVA PDEPKNWDPD HARQWLEFSK LNGVLFQGNG VIDGSGSKWW ASSCKKNKTN 180 PCRGAPTALT IDSSSSVKVK GLTIKNSQQM HFVISKSASV RISQVSVSAP GDSPNTDGIH 240 ITQSTNVVLQ DCKIGTGDDC ISIVNGSSGI KMKRIYCGPG HGVSIGSLGK DNSTGIVAKV 300 VLDTAFISET TNGVRIKTWQ GGNGYVRGVR FENVRMDNVD NPIIIDQFYC DSPASCQNKT 360 SAVKISEIMY RNISGTTKSE KAMTFACSDS VPCSNIVLSN VNLEMEDSTV ETYCNSAEGF 420 GYGIVHPSAD CLTSHDKETE LSQNYILKEE TEIDELEDSN SDHIVHTEL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-90 | 62 | 405 | 347 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 95 | 409 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-96 | 63 | 408 | 350 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 5.0e-117 | 63 | 427 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-142 | 51 | 434 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_177207.1 | 0 | 1 | 469 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 469 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 469 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 437 | 1 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 469 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-21 | 161 | 403 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-21 | 161 | 403 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-21 | 161 | 403 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-21 | 161 | 403 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-21 | 161 | 403 | 79 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |