y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G000700.1 |
Family | CBM43 |
Protein Properties | Length: 191 Molecular Weight: 21385.8 Isoelectric Point: 7.7593 |
Chromosome | Chromosome/Scaffold: 02 Start: 55140 End: 55801 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 77 | 157 | 8.9e-23 |
WCVFNEENKNLSMIADEISYACSSAACTSLGYGSSCSKMDIDGNVSYAFNMYFQMQDQGDYACNFNGLTMIVKTNASRESC |
Full Sequence |
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Protein Sequence Length: 191 Download |
MIFLTQKFYD GLLKKLVAKK ETLIDKNQKS IAPGHFERHW GLFYYDGKPK FPIDLSGKGN 60 DKMLIAAKGV QYMSPRWCVF NEENKNLSMI ADEISYACSS AACTSLGYGS SCSKMDIDGN 120 VSYAFNMYFQ MQDQGDYACN FNGLTMIVKT NASRESCLFP LQLVRAGERL ELAYEVSIIA 180 GLMLAFFSLM * 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 0.0002 | 23 | 54 | 32 | + Glycosyl hydrolases family 17. | ||
pfam07983 | X8 | 4.0e-13 | 76 | 144 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-26 | 77 | 159 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62816.1 | 0 | 4 | 170 | 281 | 461 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275701.1 | 0 | 4 | 170 | 281 | 461 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310612.1 | 0 | 4 | 190 | 286 | 485 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002337017.1 | 0 | 1 | 190 | 1 | 190 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530257.1 | 0 | 4 | 169 | 283 | 461 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.0002 | 77 | 160 | 13 | 97 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE101988 | 189 | 4 | 178 | 0 |
JG076158 | 193 | 5 | 184 | 0 |
JG074674 | 193 | 5 | 184 | 0 |
JG075654 | 191 | 5 | 182 | 0 |
GO029310 | 201 | 5 | 191 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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